def writeNetwork(self, net, netroot):
""" write a Network into a new XML node """
netroot.setAttribute('name', net.name)
netroot.setAttribute('class', canonicClassString(net))
if net.argdict:
self.writeArgs(netroot, net.argdict)
# the modules
mods = self.newChild(netroot, 'Modules')
# first write the input modules (in order)
for im in net.inmodules:
self.writeModule(mods, im, True, im in net.outmodules)
# now the output modules (in order)
for om in net.outmodules:
if om not in net.inmodules:
self.writeModule(mods, om, False, True)
# now the rest
for m in net.modulesSorted:
if m not in net.inmodules and m not in net.outmodules:
self.writeModule(mods, m, False, False)
# the motherconnections
if len(net.motherconnections) > 0:
mothers = self.newChild(netroot, 'MotherConnections')
for m in net.motherconnections:
self.writeBuildable(mothers, m)
# the connections
conns = self.newChild(netroot, 'Connections')
for m in net.modulesSorted:
for c in net.connections[m]:
self.writeConnection(conns, c, False)
if hasattr(net, "recurrentConns"):
for c in net.recurrentConns:
self.writeConnection(conns, c, True)
def writeNetwork(self, net, netroot):
""" write a Network into a new XML node """
netroot.setAttribute('name', net.name)
netroot.setAttribute('class', canonicClassString(net))
if net.argdict:
self.writeArgs(netroot, net.argdict)
# the modules
mods = self.newChild(netroot, 'Modules')
# first write the input modules (in order)
for im in net.inmodules:
self.writeModule(mods, im, True, im in net.outmodules)
# now the output modules (in order)
for om in net.outmodules:
if om not in net.inmodules:
self.writeModule(mods, om, False, True)
# now the rest
for m in net.modulesSorted:
if m not in net.inmodules and m not in net.outmodules:
self.writeModule(mods, m, False, False)
# the motherconnections
if len(net.motherconnections) > 0:
mothers = self.newChild(netroot, 'MotherConnections')
for m in net.motherconnections:
self.writeBuildable(mothers, m)
# the connections
conns = self.newChild(netroot, 'Connections')
for m in net.modulesSorted:
for c in net.connections[m]:
self.writeConnection(conns, c, False)
if isinstance(net, RecurrentNetwork):
for c in net.recurrentConns:
self.writeConnection(conns, c, True)
def writeArgs(self, node, argdict):
""" write a dictionnary of arguments """
for name, val in list(argdict.items()):
if val != None:
tmp = self.newChild(node, name)
if isclass(val):
s = canonicClassString(val)
else:
s = getattr(val, 'name', repr(val))
tmp.setAttribute('val', s)
def writeArgs(self, node, argdict):
""" write a dictionnary of arguments """
for name, val in argdict.items():
if val != None:
tmp = self.newChild(node, name)
if isclass(val):
s = canonicClassString(val)
else:
s = getattr(val, 'name', repr(val))
tmp.setAttribute('val', s)
def writeBuildable(self, rootnode, m):
""" store the class (with path) and name in a new child. """
mname = m.__class__.__name__
mnode = self.newChild(rootnode, mname)
mnode.setAttribute('name', m.name)
mnode.setAttribute('class', canonicClassString(m))
if m.argdict:
self.writeArgs(mnode, m.argdict)
if m.paramdim > 0 and not isinstance(m, SharedConnection):
self.writeParams(mnode, m.params)
return mnode
def writeBuildable(self, rootnode, m):
""" store the class (with path) and name in a new child. """
mname = m.__class__.__name__
mnode = self.newChild(rootnode, mname)
mnode.setAttribute('name', m.name)
mnode.setAttribute('class', canonicClassString(m))
if m.argdict:
self.writeArgs(mnode, m.argdict)
if m.paramdim > 0 and not isinstance(m, SharedConnection):
self.writeParams(mnode, m.params)
return mnode
def writeArgs(self, node, argdict):
""" write a dictionnary of arguments """
for name, val in argdict.items():
if val != None:
tmp = self.newChild(node, name)
if isclass(val):
s = canonicClassString(val)
elif isinstance(val, ndarray):
tmp.setAttribute('shape', 'x'.join([str(x) for x in val.shape]))
tmp.setAttribute('dtype', str(val.dtype))
output = BytesIO()
savetxt(output, val.view(float))
self.addTextNode(tmp, output.getvalue())
s = 'ndarray'
else:
s = getattr(val, 'name', repr(val))
tmp.setAttribute('val', s)
