def __init__(self, fileName, isRdb=False, idIsUniq=False):
self.idIsUniq = idIsUniq
if idIsUniq:
uniqKeyCols="acc"
multiKeyCols=None
else:
uniqKeyCols=None
multiKeyCols="acc"
TsvTable.__init__(self, fileName, typeMap=typeMap, isRdb=isRdb, uniqKeyCols=uniqKeyCols, multiKeyCols=multiKeyCols)
self.idIndex = self.indices.acc
def testAddColumn(self):
tsv = TsvTable(self.getInputFile("mrna1.tsv"), uniqKeyCols="qName")
tsv.addColumn("joke")
i = 0
for row in tsv:
row.joke = i
i += 1
fh = open(self.getOutputFile(".tsv"), "w")
tsv.write(fh)
fh.close()
self.diffExpected(".tsv")
def __init__(self, fileName):
TsvTable.__init__(self, fileName, typeMap=typeMap, multiKeyCols=("inId","selectId"))
def testWrite(self):
tsv = TsvTable(self.getInputFile("mrna1.tsv"), uniqKeyCols="qName")
fh = open(self.getOutputFile(".tsv"), "w")
tsv.write(fh)
fh.close()
self.diffExpected(".tsv")
def __init__(self, fspec):
TsvTable.__init__(self, fspec, typeMap=typeMap)
def __init__(self, fileName, isRdb=False):
TsvTable.__init__(self, fileName, typeMap=typeMap, isRdb=isRdb)