def _analysis_path(runid,
repository,
modifier=None,
extension='.json',
mode='r',
root=None):
if root is None:
root = paths.repository_dataset_dir
root = os.path.join(root, repository)
if UUID_RE.match(runid):
sublen = 5
elif WISCAR_ID_RE.match(runid):
sublen = 3
else:
sublen = 3
if runid.count('-') > 1:
args = runid.split('-')[:-1]
if len(args[0]) == 1:
sublen = 4
else:
sublen = 5
try:
root, tail = subdirize(root, runid, sublen=sublen, mode=mode)
except TypeError:
raise AnalysisNotAnvailableError(root, runid)
if modifier:
d = os.path.join(root, modifier)
if not os.path.isdir(d):
if mode == 'r':
raise AnalysisNotAnvailableError(root, runid)
os.mkdir(d)
root = d
fmt = '{}.{}'
if modifier.startswith('.'):
fmt = '{}{}'
tail = fmt.format(tail, modifier[:4])
name = add_extension(tail, extension)
path = os.path.join(root, name)
if mode == 'r':
if not os.path.isfile(path):
raise AnalysisNotAnvailableError(root, runid)
return path
def _analysis_path(runid, repository, modifier=None, extension='.json', mode='r', root=None):
if root is None:
root = paths.repository_dataset_dir
root = os.path.join(root, repository)
if UUID_RE.match(runid):
sublen = 5
elif WISCAR_ID_RE.match(runid):
sublen = 3
else:
sublen = 3
if runid.count('-') > 1:
args = runid.split('-')[:-1]
if len(args[0]) == 1:
sublen = 4
else:
sublen = 5
try:
root, tail = subdirize(root, runid, sublen=sublen, mode=mode)
except TypeError:
raise AnalysisNotAnvailableError(root, runid)
if modifier:
d = os.path.join(root, modifier)
if not os.path.isdir(d):
if mode == 'r':
raise AnalysisNotAnvailableError(root, runid)
os.mkdir(d)
root = d
fmt = '{}.{}'
if modifier.startswith('.'):
fmt = '{}{}'
tail = fmt.format(tail, modifier[:4])
name = add_extension(tail, extension)
path = os.path.join(root, name)
if mode == 'r':
if not os.path.isfile(path):
raise AnalysisNotAnvailableError(root, runid)
return path
def analysis_path(runid,
repository,
modifier=None,
extension='.json',
mode='r'):
root = os.path.join(paths.repository_dataset_dir, repository)
l = 3
if runid.count('-') > 1:
args = runid.split('-')[:-1]
if len(args[0]) == 1:
l = 4
else:
l = 5
try:
root, tail = subdirize(root, runid, l=l, mode=mode)
except TypeError:
raise AnalysisNotAnvailableError(root, runid)
# head, tail = runid[:3], runid[3:]
# # if modifier:
# # tail = '{}{}'.format(tail, modifier)
# root = os.path.join(paths.experiment_dataset_dir, experiment, head)
# if not os.path.isdir(root):
# os.mkdir(root)
if modifier:
d = os.path.join(root, modifier)
if not os.path.isdir(d):
if mode == 'r':
return
os.mkdir(d)
root = d
fmt = '{}.{}'
if modifier.startswith('.'):
fmt = '{}{}'
tail = fmt.format(tail, modifier[:4])
name = add_extension(tail, extension)
return os.path.join(root, name)
def analysis_path(runid, repository, modifier=None, extension='.json', mode='r'):
root = os.path.join(paths.repository_dataset_dir, repository)
l = 3
if runid.count('-') > 1:
args = runid.split('-')[:-1]
if len(args[0]) == 1:
l = 4
else:
l = 5
try:
root, tail = subdirize(root, runid, l=l, mode=mode)
except TypeError:
raise AnalysisNotAnvailableError(root, runid)
# head, tail = runid[:3], runid[3:]
# # if modifier:
# # tail = '{}{}'.format(tail, modifier)
# root = os.path.join(paths.experiment_dataset_dir, experiment, head)
# if not os.path.isdir(root):
# os.mkdir(root)
if modifier:
d = os.path.join(root, modifier)
if not os.path.isdir(d):
if mode == 'r':
return
os.mkdir(d)
root = d
fmt = '{}.{}'
if modifier.startswith('.'):
fmt = '{}{}'
tail = fmt.format(tail, modifier[:4])
name = add_extension(tail, extension)
return os.path.join(root, name)
def pre_measurement_save(self):
"""
setup hdf5 file
"""
self.info('pre measurement save')
dm = self.data_manager
# make a new frame for saving data
name = self.per_spec.run_spec.uuid
root, tail = subdirize(paths.isotope_dir, '{}.h5'.format(name), mode='w')
path = os.path.join(root, tail)
# path = os.path.join(paths.isotope_dir, '{}.h5'.format(name))
self._current_data_frame = path
frame = dm.new_frame(path)
attrs = frame.root._v_attrs
attrs['USER'] = self.per_spec.run_spec.username
attrs['ANALYSIS_TYPE'] = self.per_spec.run_spec.analysis_type
dm.close_file()
def pre_measurement_save(self):
"""
setup hdf5 file
"""
self.info('pre measurement save')
dm = self.data_manager
# make a new frame for saving data
name = self.per_spec.run_spec.uuid
root, tail = subdirize(paths.isotope_dir,
'{}.h5'.format(name),
mode='w')
path = os.path.join(root, tail)
# path = os.path.join(paths.isotope_dir, '{}.h5'.format(name))
self._current_data_frame = path
frame = dm.new_frame(path)
attrs = frame.root._v_attrs
attrs['USER'] = self.per_spec.run_spec.username
attrs['ANALYSIS_TYPE'] = self.per_spec.run_spec.analysis_type
dm.close_file()
