class QueueTest(unittest.TestCase):
@classmethod
def setUpClass(cls):
p = './data/experiment.txt'
cls.txt = open(p).read()
def setUp(self):
self._queue = ExperimentQueue()
self._queue.load(self.txt)
def testLoadActions(self):
q = self._queue
self.assertEqual(len(q.queue_actions), 2)
def testActions(self):
q = self._queue
act = q.queue_actions[0]
self.assertEqual(act.analysis_type, 'blank_unknown')
self.assertEqual(act.nrepeat, 3)
act = q.queue_actions[1]
self.assertEqual(act.nrepeat, 1)
def testCheckRun(self):
q = self._queue
act = q.queue_actions[0]
run = MockRun()
run.Ar40 = ufloat(100, 0)
self.assertTrue(act.check_run(run))
run.Ar40 = ufloat(10, 0)
self.assertFalse(act.check_run(run))
class QueueTest(unittest.TestCase):
@classmethod
def setUpClass(cls):
p = './data/experiment.txt'
cls.txt = open(p).read()
def setUp(self):
self._queue = ExperimentQueue()
self._queue.load(self.txt)
def testLoadActions(self):
q = self._queue
self.assertEqual(len(q.queue_actions), 2)
def testActions(self):
q = self._queue
act = q.queue_actions[0]
self.assertEqual(act.analysis_type, 'blank_unknown')
self.assertEqual(act.nrepeat, 3)
act = q.queue_actions[1]
self.assertEqual(act.nrepeat, 1)
def testCheckRun(self):
q = self._queue
act = q.queue_actions[0]
run = MockRun()
run.Ar40 = ufloat(100, 0)
self.assertTrue(act.check_run(run))
run.Ar40 = ufloat(10, 0)
self.assertFalse(act.check_run(run))
def run():
hp = hpy()
globalv.experiment_debug = True
# t = ExperimentEditorTask()
# p = os.path.join(paths.experiment_dir, 'demo.txt')
# t._open_experiment(p)
q = ExperimentQueue(delay_before_analyses=0, delay_between_analyses=0)
q.automated_runs = [
AutomatedRunSpec(labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'),
AutomatedRunSpec(labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'),
AutomatedRunSpec(labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'),
AutomatedRunSpec(labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'),
AutomatedRunSpec(labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan')
]
dbman = isotope_manager_factory()
specman = SpectrometerManager()
specman.load()
ex = ExperimentExecutor(
db=dbman.db,
spectrometer_manager=specman,
extraction_line_manager='',
executable=True,
)
ex.monitor = None
ex.experiment_queues = [
q,
]
ex.experiment_queue = q
hp.setrelheap()
t = ex.execute()
t.join()
# count_instances(group='sqlalchemy')
return hp
class ResetQueuesTestCase(unittest.TestCase):
def setUp(self):
self.queue = ExperimentQueue()
eruns = [MockRun('12345', 5, 1), MockRun('12346', 10, 2)]
self.queue.executed_runs = eruns
def test_an(self):
self.queue.reset()
self.assertEqual(len(self.queue.automated_runs), 2)
def test_en(self):
self.queue.reset()
self.assertEqual(len(self.queue.executed_runs), 0)
def test_aliquot(self):
self.queue.reset()
a = self.queue.automated_runs[0]
self.assertEqual(a.aliquot, 0)
class ResetQueuesTestCase(unittest.TestCase):
def setUp(self):
self.queue= ExperimentQueue()
eruns = [MockRun('12345',5, 1),
MockRun('12346',10,2)]
self.queue.executed_runs=eruns
def test_an(self):
self.queue.reset()
self.assertEqual(len(self.queue.automated_runs), 2)
def test_en(self):
self.queue.reset()
self.assertEqual(len(self.queue.executed_runs), 0)
def test_aliquot(self):
self.queue.reset()
a = self.queue.automated_runs[0]
self.assertEqual(a.aliquot, 0)
def setUp(self):
self._queue = ExperimentQueue()
self._queue.load(self.txt)
def run():
hp = hpy()
globalv.experiment_debug = True
# t = ExperimentEditorTask()
# p = os.path.join(paths.experiment_dir, 'demo.txt')
# t._open_experiment(p)
q = ExperimentQueue(delay_before_analyses=0,
delay_between_analyses=0)
q.automated_runs = [
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
)
]
dbman = isotope_manager_factory()
specman = ArgusSpectrometerManager()
specman.load()
ex = ExperimentExecutor(db=dbman.db,
spectrometer_manager=specman,
extraction_line_manager='',
executable=True,
)
ex.monitor = None
ex.experiment_queues = [q, ]
ex.experiment_queue = q
hp.setrelheap()
t = ex.execute()
t.join()
# count_instances(group='sqlalchemy')
return hp
def setUp(self):
self.queue= ExperimentQueue()
eruns = [MockRun('12345',5, 1),
MockRun('12346',10,2)]
self.queue.executed_runs=eruns
def setUp(self):
self.queue = ExperimentQueue()
eruns = [MockRun('12345', 5, 1), MockRun('12346', 10, 2)]
self.queue.executed_runs = eruns
def queue_factory(self, **kw):
return ExperimentQueue(**kw)
def setUp(self):
self._queue = ExperimentQueue()
self._queue.load(self.txt)
def queue_factory(self, **kw):
print 'application', self.application
return ExperimentQueue(application=self.application, **kw)
