def toPropertyMap(self) -> PropertyMap:
return PropertyMap({
"DefaultXYStage": Property(self.defaultXYStage),
"DefaultZStage": Property(self.defaultZStage),
"DevicePositions": PropertyMapArray([i.toPropertyMap() for i in self.stagePositions]),
"GridCol": Property(0),
"GridRow": Property(0),
"Label": Property(self.label),
"Properties": PropertyMap({})
})
def toPropertyMap(self) -> PropertyMap:
"""Returns the position list as a PropertyMap that is formatted just like a `PropertyMap` from Micro-Manager."""
pmap = PropertyMap({
"StagePositions":
PropertyMapArray([i.toPropertyMap() for i in self.positions])
})
return pmap
def toPropertyMap(self) -> PropertyMap:
return PropertyMap({
"Device":
Property(self.stageName),
"Position_um":
PropertyArray([Property(self.x),
Property(self.y)]),
})
def load(cls, fileName: str) -> PositionList:
return cls.fromPropertyMap(PropertyMap.loadFromFile(fileName))
annot.set_visible(True)
fig.canvas.draw_idle()
else:
if vis:
annot.set_visible(False)
fig.canvas.draw_idle()
fig.canvas.mpl_connect("motion_notify_event", hover)
if __name__ == "__main__":
path1 = r"PositionList.pos"
path2 = r"PositionListOut.pos"
## Test that loading, mirroring, and then saving results in no changes to the position list.
p = PropertyMap.loadFromFile(path1)
pp = PositionList.fromPropertyMap(p)
pp.mirrorX().mirrorY().mirrorX().mirrorY()
ppp = pp.toPropertyMap()
ppp.saveToFile(path2)
with open(path1) as f1, open(path2) as f2:
assert f1.read() == f2.read()
def generateList(data: np.ndarray):
"""Example function to create a brand new position list in python."""
assert isinstance(data, np.ndarray)
assert len(data.shape) == 2
assert data.shape[1] == 2
positions = []
for n, i in enumerate(data):
positions.append(Position2d(*i, "TIXYDrive", f"Cell{n + 1}"))
