Exemplo n.º 1
0
def generate_fa_sizes(fname, outname):
    """Generate a fa.sizes file.

    Parameters
    ----------
    fname : str
        Filename of input FASTA file.

    outname : str
        Filename of output BED file.
    """
    f = Fasta(fname)
    with open(outname, "w") as sizes:
        for seqname, seq in f.items():
            sizes.write(f"{seqname}\t{len(seq)}\n")