def run_file(filename):
if 'checkpoint' not in filename.name:
if 'build' not in str(filename.parent):
with pyfeasst.cd(filename.parent):
print("Running:", filename, "in", filename.parent)
pyfeasst.bash_command(
"rm tutorial_failures.txt tutorial_log.txt")
pyfeasst.bash_command(
"jupyter nbconvert --to notebook --inplace --ExecutePreprocessor.timeout=10000 --execute "
+ str(filename) +
" > tutorial_log.txt 2>&1; grep \"Error\|Assertion\" tutorial_log.txt >> tutorial_failures.txt"
)
pyfeasst.bash_command("grep \"FAILED (fa\" " + str(filename) +
" >> tutorial_failures.txt")
pyfeasst.bash_command("grep \"Error\" " + str(filename) +
" >> tutorial_failures.txt")
pyfeasst.bash_command("grep \"ERROR\" " + str(filename) +
" >> tutorial_failures.txt")
pyfeasst.bash_command("grep \"feasst::CustomException\" " +
str(filename) +
" >> tutorial_failures.txt")
from pathlib import Path
import feasst
import pyfeasst
pyfeasst.bash_command("rm tutorial_failures.txt")
for filename in Path(feasst.install_dir()).rglob('*.ipynb'):
if 'checkpoint' not in filename.name:
with pyfeasst.cd(filename.parent):
print("Running:", filename, "in", filename.parent)
pyfeasst.bash_command(
"jupyter nbconvert --to notebook --inplace --ExecutePreprocessor.timeout=10000 --execute "
+ str(filename))
pyfeasst.bash_command("grep \"FAILED (fa\" " + str(filename) +
" >> tutorial_failures.txt")
pyfeasst.bash_command("grep \"Error\" " + str(filename) +
" >> tutorial_failures.txt")
import re
def read_class(file_name):
cls = list()
with open(file_name, 'r') as fle:
lines = fle.readlines()
for line in lines:
if re.search(r'^class ', line) and not re.search(';$', line):
cls.append(line.split(' ')[1])
return cls
# obtain the headers sorted by dependency
# write the swig interface file
with pyfeasst.cd(args.source_dir + '/plugin/'):
deps = bubble_sort(dependency('./'))
classes = list()
# note this method for reading classes is copied below for doc
for dep in deps:
header = dep[0]
cls = read_class(header)
classes.append(cls)
# obtain the headers sorted by dependency
# write the swig interface file
with pyfeasst.cd(args.source_dir + '/plugin/'):
with open('../py/feasst.i', 'w') as swig_file:
swig_file.write("/* This is an interface file for swig.\n\
This file is created by dev/tools/depend.py . Modifications to this\n\
file will likely be overwritten in the future. Thus, edit depend.py\n\