Exemplo n.º 1
0
def front_mesh_wedge(res=0.025):
    """
    Creates a wedged mesh with symmetry line through y = c_y
    """
    geometry = Geometry()
    mesh_r = width_scale*res
    c = geometry.add_point((c_x,c_y,0))
    
    # Elliptic obstacle
    y_fac = 1
    r_ =0.7
    p1 = geometry.add_point((c_x-r_x, c_y,0),lcar=res/2)
    pt1 = geometry.add_point((c_x-r_*r_x,c_y+y_fac*r_x,0),lcar=res/2)
    pt2 = geometry.add_point((c_x+r_*r_x,c_y+y_fac*r_x,0),lcar=res/2)
    pb1 = geometry.add_point((c_x-r_*r_x, c_y-y_fac*r_x,0),lcar=res/2)
    pb2 = geometry.add_point((c_x+r_*r_x, c_y-y_fac*r_x,0),lcar=res/2)

    p2 = geometry.add_point((c_x+r_x, c_y,0),lcar=res/2)
    # embed()
    arc_1 = geometry.add_bspline([p1, pt1,pt2, p2])
    arc_2 = geometry.add_bspline([p2, pb2,pb1, p1])

    # Surrounding mesh
    p3 = geometry.add_point((c_x-r_x-mesh_r, c_y,0),lcar=res)
    p4 = geometry.add_point((c_x+r_x+mesh_r, c_y,0),lcar=res)
    pt_1 = geometry.add_point((c_x-r_*r_x*y_fac, c_y+y_fac*r_x+mesh_r,0),
                              lcar=res)
    pt_2 = geometry.add_point((c_x+r_*r_x*y_fac, c_y+y_fac*r_x+mesh_r,0)
                              ,lcar=res)
    pb_1 = geometry.add_point((c_x-r_*r_x*y_fac, c_y-y_fac*r_x-mesh_r,0),
                              lcar=res)
    pb_2 = geometry.add_point((c_x+r_*r_x*y_fac, c_y-y_fac*r_x-mesh_r,0),
                              lcar=res)

    arc_5 = geometry.add_bspline([p3, pt_1, pt_2, p4])
    arc_6 = geometry.add_bspline([p4, pb_2, pb_1, p3])
    obstacle_loop = geometry.add_line_loop([arc_1, arc_2])
    outer_loop = geometry.add_line_loop([arc_5,arc_6])
    donut = geometry.add_plane_surface(obstacle_loop, holes = [outer_loop])
    geometry.add_physical_surface([donut],label=12)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)
    geometry.add_physical_line(outer_loop.lines, label=outer_marker)

    # Generate mesh
    (points, cells, point_data,
     cell_data, field_data) = generate_mesh(geometry, prune_z_0=True,
                                            geo_filename="meshes/test.geo")
    
    # Save mesh and mesh-function to file
    meshio.write("multimesh_1.xdmf", meshio.Mesh(
        points=points, cells={"triangle": cells["triangle"]}))
    
    meshio.write("mf_1.xdmf", meshio.Mesh(
        points=points, cells={"line": cells["line"]},
        cell_data={"line": {"name_to_read":
                            cell_data["line"]["gmsh:physical"]}}))
    import os
    os.system("mv multimesh_1.* meshes/")
    os.system("mv mf_1.* meshes/")
def front_mesh(res=0.025):
    geometry = Geometry()
    c = geometry.add_point((c_x, c_y, 0))
    mesh_r = 5 * res  # Width of mesh

    # Elliptic obstacle
    p1 = geometry.add_point((c_x - r_x, c_y, 0))
    p2 = geometry.add_point((c_x, c_y + r_y, 0))
    p3 = geometry.add_point((c_x + r_x, c_y, 0))
    p4 = geometry.add_point((c_x, c_y - r_y, 0))
    arc_1 = geometry.add_ellipse_arc(p1, c, p2, p2)
    arc_2 = geometry.add_ellipse_arc(p2, c, p3, p3)
    arc_3 = geometry.add_ellipse_arc(p3, c, p4, p4)
    arc_4 = geometry.add_ellipse_arc(p4, c, p1, p1)
    obstacle_loop = geometry.add_line_loop([arc_1, arc_2, arc_3, arc_4])

    # Surrounding mesh
    p1 = geometry.add_point((c_x - r_x - mesh_r, c_y, 0))
    p2 = geometry.add_point((c_x, c_y + r_y + mesh_r, 0))
    p3 = geometry.add_point((c_x + r_x + mesh_r, c_y, 0))
    p4 = geometry.add_point((c_x, c_y - r_y - mesh_r, 0))
    arc_5 = geometry.add_ellipse_arc(p1, c, p2, p2)
    arc_6 = geometry.add_ellipse_arc(p2, c, p3, p3)
    arc_7 = geometry.add_ellipse_arc(p3, c, p4, p4)
    arc_8 = geometry.add_ellipse_arc(p4, c, p1, p1)
    loop = geometry.add_line_loop([arc_5, arc_6, arc_7, arc_8])
    mesh = geometry.add_plane_surface(loop, holes=[obstacle_loop])
    geometry.add_physical_surface(mesh, label=12)
    geometry.add_physical_line(loop.lines, label=outer_marker)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)

    # Create refined mesh around geometry
    field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
                                        hfar=res,
                                        hwall_n=res / 2,
                                        thickness=2 * res)
    geometry.add_background_field([field])

    # Generate mesh
    (points, cells, point_data, cell_data,
     field_data) = generate_mesh(geometry,
                                 prune_z_0=True,
                                 geo_filename="meshes/test.geo")

    # Save mesh and mesh-function to file
    meshio.write(
        "meshes/multimesh_1.xdmf",
        meshio.Mesh(points=points, cells={"triangle": cells["triangle"]}))

    meshio.write(
        "meshes/mf_1.xdmf",
        meshio.Mesh(points=points,
                    cells={"line": cells["line"]},
                    cell_data={
                        "line": {
                            "name_to_read": cell_data["line"]["gmsh:physical"]
                        }
                    }))
Exemplo n.º 3
0
def single_mesh(res=0.025):
    """ 
    Creates a single mesh containing a circular obstacle
    """

    geometry = Geometry()
    c = geometry.add_point((c_x, c_y, 0))

    # Elliptic obstacle
    p1 = geometry.add_point((c_x - r_x, c_y, 0))
    p2 = geometry.add_point((c_x, c_y + r_x, 0))
    p3 = geometry.add_point((c_x + r_x, c_y, 0))
    p4 = geometry.add_point((c_x, c_y - r_x, 0))
    arc_1 = geometry.add_ellipse_arc(p1, c, p2, p2)
    arc_2 = geometry.add_ellipse_arc(p2, c, p3, p3)
    arc_3 = geometry.add_ellipse_arc(p3, c, p4, p4)
    arc_4 = geometry.add_ellipse_arc(p4, c, p1, p1)
    obstacle_loop = geometry.add_line_loop([arc_1, arc_2, arc_3, arc_4])

    rectangle = geometry.add_rectangle(0,
                                       L,
                                       0,
                                       H,
                                       0,
                                       res,
                                       holes=[obstacle_loop])
    flow_list = [rectangle.line_loop.lines[3]]
    obstacle_list = obstacle_loop.lines
    walls_list = [rectangle.line_loop.lines[0], rectangle.line_loop.lines[2]]
    geometry.add_physical_surface(rectangle.surface, label=12)
    geometry.add_physical_line(flow_list, label=inflow)
    geometry.add_physical_line(walls_list, label=walls)
    geometry.add_physical_line([rectangle.line_loop.lines[1]], label=outflow)
    geometry.add_physical_line(obstacle_list, label=obstacle)
    field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
                                        hfar=res,
                                        hwall_n=res / 8,
                                        thickness=res / 2)
    geometry.add_background_field([field])

    (points, cells, point_data, cell_data,
     field_data) = generate_mesh(geometry,
                                 prune_z_0=True,
                                 geo_filename="test.geo")

    meshio.write(
        "mesh.xdmf",
        meshio.Mesh(points=points, cells={"triangle": cells["triangle"]}))

    meshio.write(
        "mf.xdmf",
        meshio.Mesh(points=points,
                    cells={"line": cells["line"]},
                    cell_data={
                        "line": {
                            "name_to_read": cell_data["line"]["gmsh:physical"]
                        }
                    }))
Exemplo n.º 4
0
def front_mesh_symmetric(res=0.025):
    """
    Creates a donut mesh with symmetry line through y = c_y
    """
    geometry = Geometry()
    mesh_r = width_scale*res
    c = geometry.add_point((c_x,c_y,0))
    
    # Elliptic obstacle
    p1 = geometry.add_point((c_x-r_x, c_y,0))
    p2 = geometry.add_point((c_x+r_x, c_y,0))
    # embed()
    arc_1 = geometry.add_circle_arc(p1, c, p2)
    arc_2 = geometry.add_circle_arc(p2, c, p1)

    # Surrounding mesh
    p3 = geometry.add_point((c_x-r_x-mesh_r, c_y,0))
    p4 = geometry.add_point((c_x+r_x+mesh_r, c_y,0))
    arc_5 = geometry.add_circle_arc(p3, c, p4)
    arc_6 = geometry.add_circle_arc(p4, c, p3)
    line_front = geometry.add_line(p3, p1)
    line_back = geometry.add_line(p2, p4)    
    surface_top = geometry.add_line_loop([line_front, arc_1, line_back, -arc_5])
    surface_bottom = geometry.add_line_loop([line_front, -arc_2, line_back,
                                             arc_6])

    obstacle_loop = geometry.add_line_loop([arc_1, arc_2])
    outer_loop = geometry.add_line_loop([arc_5,arc_6])
    
    top = geometry.add_plane_surface(surface_top)
    bottom = geometry.add_plane_surface(surface_bottom)
    geometry.add_physical_surface([top, bottom],label=12)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)
    geometry.add_physical_line(outer_loop.lines, label=outer_marker)

    # Create refined mesh around geometry
    field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
                                        hfar=res, hwall_n=res/3,
                                        thickness=0.1*mesh_r)
    geometry.add_background_field([field])

    # Generate mesh
    (points, cells, point_data,
     cell_data, field_data) = generate_mesh(geometry, prune_z_0=True,
                                            geo_filename="meshes/test.geo")

    # Save mesh and mesh-function to file
    meshio.write("multimesh_1.xdmf", meshio.Mesh(
        points=points, cells={"triangle": cells["triangle"]}))
    
    meshio.write("mf_1.xdmf", meshio.Mesh(
        points=points, cells={"line": cells["line"]},
        cell_data={"line": {"name_to_read":
                            cell_data["line"]["gmsh:physical"]}}))
    import os
    os.system("mv multimesh_1.* meshes/")
    os.system("mv mf_1.* meshes/")
def single_mesh(res=0.025):
    """
    Create rectangular background mesh for the Poisson problem
    """
    geometry = Geometry()
    c = geometry.add_point((c_x, c_y, 0))
    mesh_r = 5 * res  # Width of mesh

    # Elliptic obstacle
    p1 = geometry.add_point((c_x - r_x, c_y, 0))
    p2 = geometry.add_point((c_x, c_y + r_y, 0))
    p3 = geometry.add_point((c_x + r_x, c_y, 0))
    p4 = geometry.add_point((c_x, c_y - r_y, 0))
    arc_1 = geometry.add_ellipse_arc(p1, c, p2, p2)
    arc_2 = geometry.add_ellipse_arc(p2, c, p3, p3)
    arc_3 = geometry.add_ellipse_arc(p3, c, p4, p4)
    arc_4 = geometry.add_ellipse_arc(p4, c, p1, p1)
    obstacle_loop = geometry.add_line_loop([arc_1, arc_2, arc_3, arc_4])

    # Surrounding mesh
    rectangle = geometry.add_rectangle(0,
                                       L,
                                       0,
                                       H,
                                       0,
                                       res,
                                       holes=[obstacle_loop])
    geometry.add_physical_surface(rectangle.surface, label=12)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)
    geometry.add_physical_line(rectangle.line_loop.lines, label=outer_marker)
    # Create refined mesh around geometry
    field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
                                        hfar=res,
                                        hwall_n=res / 2,
                                        thickness=2 * res)
    geometry.add_background_field([field])

    # Generate mesh
    (points, cells, point_data, cell_data,
     field_data) = generate_mesh(geometry,
                                 prune_z_0=True,
                                 geo_filename="meshes/test_single.geo")

    # Save mesh and mesh-function to file
    meshio.write(
        "meshes/singlemesh.xdmf",
        meshio.Mesh(points=points, cells={"triangle": cells["triangle"]}))

    meshio.write(
        "meshes/mf.xdmf",
        meshio.Mesh(points=points,
                    cells={"line": cells["line"]},
                    cell_data={
                        "line": {
                            "name_to_read": cell_data["line"]["gmsh:physical"]
                        }
                    }))
Exemplo n.º 6
0
def background_mesh(res=0.025):
    """
    Create rectangular background mesh for the Poisson problem
    """
    geo = Geometry()
    # Create points for square with two inlets and one outlet
    points = []
    points.append(geo.add_point((0, 0, 0), res))
    points.append(geo.add_point((1, 0, 0), res))
    points.append(geo.add_point((1, 1, 0), res))
    points.append(geo.add_point(outlet[1], res))
    points.append(geo.add_point(outlet[0], res))
    points.append(geo.add_point((0, 1, 0), res))
    points.append(geo.add_point(inlet1[1], res))
    points.append(geo.add_point(inlet1[0], res))
    points.append(geo.add_point(inlet0[1], res))
    points.append(geo.add_point(inlet0[0], res))
    # Connect points as lines
    lines = []
    for i in range(len(points) - 1):
        lines.append(geo.add_line(points[i], points[i + 1]))
    lines.append(geo.add_line(points[-1], points[0]))
    # Create geometry
    line_loop = geo.add_line_loop(lines)
    square = geo.add_plane_surface(line_loop)

    # Create cell and facet function
    wall_lines = lines[0:3] + lines[4:6] + [lines[7]] + [lines[9]]
    inlet0_lines = [lines[8]]
    inlet1_lines = [lines[6]]
    outlet_lines = [lines[3]]
    geo.add_physical_surface([square], label=12)
    geo.add_physical_line(inlet0_lines, label=inlet0_marker)
    geo.add_physical_line(inlet1_lines, label=inlet1_marker)
    geo.add_physical_line(outlet_lines, label=outlet_marker)
    geo.add_physical_line(wall_lines, label=wall_marker)

    # Create mesh
    (points, cells, point_data, cell_data,
     field_data) = generate_mesh(geo, prune_z_0=True)  #,
    #geo_filename="meshes/tmp.geo")

    meshio.write(
        "meshes/multimesh_0.xdmf",
        meshio.Mesh(points=points, cells={"triangle": cells["triangle"]}))

    meshio.write(
        "meshes/mf_0.xdmf",
        meshio.Mesh(points=points,
                    cells={"line": cells["line"]},
                    cell_data={
                        "line": {
                            "name_to_read": cell_data["line"]["gmsh:physical"]
                        }
                    }))
Exemplo n.º 7
0
def front_mesh_unsym(res=0.025):
    """
    Creates unsymmetric donut mesh
    """
    geometry = Geometry()
    mesh_r = width_scale*res
    c = geometry.add_point((c_x,c_y,0))
    
    # Elliptic obstacle
    p1 = geometry.add_point((c_x-r_x, c_y,0),lcar=res/2)
    p2 = geometry.add_point((c_x+r_x, c_y,0),lcar=res/2)

    arc_1 = geometry.add_circle_arc(p1, c, p2)
    arc_2 = geometry.add_circle_arc(p2, c, p1)

    # Surrounding mesh
    p3 = geometry.add_point((c_x-r_x-mesh_r, c_y,0),lcar=res)
    p4 = geometry.add_point((c_x+r_x+mesh_r, c_y,0),lcar=res)
    arc_5 = geometry.add_circle_arc(p3, c, p4)
    arc_6 = geometry.add_circle_arc(p4, c, p3)
    obstacle_loop = geometry.add_line_loop([arc_1, arc_2])
    outer_loop = geometry.add_line_loop([arc_5,arc_6])
    
    donut = geometry.add_plane_surface(obstacle_loop, holes=[outer_loop])
   
    geometry.add_physical_surface([donut],label=12)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)
    geometry.add_physical_line(outer_loop.lines, label=outer_marker)

    # Create refined mesh around geometry
    # field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
    #                                     hfar=res, hwall_n=res/3,
    #                                     thickness=2*res)
    # geometry.add_background_field([field])

    # Generate mesh
    (points, cells, point_data,
     cell_data, field_data) = generate_mesh(geometry, prune_z_0=True,
                                            geo_filename="meshes/test.geo")

    # Save mesh and mesh-function to file
    meshio.write("meshes/multimesh_1.xdmf", meshio.Mesh(
        points=points, cells={"triangle": cells["triangle"]}))
    
    meshio.write("meshes/mf_1.xdmf", meshio.Mesh(
        points=points, cells={"line": cells["line"]},
        cell_data={"line": {"name_to_read":
                            cell_data["line"]["gmsh:physical"]}}))
Exemplo n.º 8
0
def single_mesh(res=0.025):
    geometry = Geometry()
    c = geometry.add_point((c_x, c_y, 0))

    # Elliptic obstacle
    p1 = geometry.add_point((c_x - r_x, c_y, 0))
    p2 = geometry.add_point((c_x, c_y + r_y, 0))
    p3 = geometry.add_point((c_x + r_x, c_y, 0))
    p4 = geometry.add_point((c_x, c_y - r_y, 0))
    arc_1 = geometry.add_ellipse_arc(p1, c, p2, p2)
    arc_2 = geometry.add_ellipse_arc(p2, c, p3, p3)
    arc_3 = geometry.add_ellipse_arc(p3, c, p4, p4)
    arc_4 = geometry.add_ellipse_arc(p4, c, p1, p1)
    obstacle_loop = geometry.add_line_loop([arc_1, arc_2, arc_3, arc_4])

    rectangle = geometry.add_rectangle(0,
                                       L,
                                       0,
                                       H,
                                       0,
                                       res,
                                       holes=[obstacle_loop])

    geometry.add_physical_surface(rectangle.surface, label=12)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)
    geometry.add_physical_line(rectangle.line_loop.lines, label=outer_marker)
    field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
                                        hfar=res,
                                        hwall_n=res / 2,
                                        thickness=2 * res)
    geometry.add_background_field([field])

    (points, cells, point_data, cell_data,
     field_data) = generate_mesh(geometry, prune_z_0=True)

    meshio.write(
        "meshes/singlemesh.xdmf",
        meshio.Mesh(points=points, cells={"triangle": cells["triangle"]}))

    meshio.write(
        "meshes/mf.xdmf",
        meshio.Mesh(points=points,
                    cells={"line": cells["line"]},
                    cell_data={
                        "line": {
                            "name_to_read": cell_data["line"]["gmsh:physical"]
                        }
                    }))
Exemplo n.º 9
0
def background_mesh(res=0.025):
    """
    Create rectangular background mesh for the Poisson problem
    """
    geometry = Geometry()
    square = geometry.add_rectangle(0,L,0,H,0, 5*res)
    geometry.add_physical_surface([square.surface],label=12)
    geometry.add_physical_line([square.line_loop.lines[3]], label=inflow)
    geometry.add_physical_line([square.line_loop.lines[1]], label=outflow)
    geometry.add_physical_line([square.line_loop.lines[0],
                                square.line_loop.lines[2]], label=walls)
    p_c = geometry.add_point((c_x,c_y,0),lcar=0.1*res)
    geometry.add_raw_code(["Field[1]=Attractor;",
                           "Field[1].NodesList={{ {} }};".format(p_c.id),
                           "Field[2]=Threshold;",
                           "Field[2].IField=1;",
                           "Field[2].LcMin={};".format(res),
                           "Field[2].LcMax={};".format(5*res),
                           "Field[2].DistMin={};".format(2*r_x),
                           "Field[2].DistMax={};".format(4*r_x),
                           "Field[3]=Min;",
                           "Field[3].FieldsList = {2};",
                           "Background Field = 3;"])
    (points, cells, point_data,
     cell_data, field_data) = generate_mesh(geometry, prune_z_0=True,dim=2,
                                            geo_filename="meshes/tmp.geo")
    meshio.write("multimesh_0.xdmf", meshio.Mesh(
        points=points, cells={"triangle": cells["triangle"]}))
    
    meshio.write("mf_0.xdmf", meshio.Mesh(
        points=points, cells={"line": cells["line"]},
        cell_data={"line": {"name_to_read":
                            cell_data["line"]["gmsh:physical"]}}))
    import os
    os.system("mv multimesh_0.* meshes/")
    os.system("mv mf_0.* meshes/")
Exemplo n.º 10
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from pygmsh import generate_mesh
import meshio
import dolfin
import dolfin.io
from dolfin.plotting import plot
import matplotlib

# Define input data
from ufl import SpatialCoordinate, inner, grad, lhs, rhs, dot, exp, Measure, dx, ds
from dolfin.fem import assemble_scalar
from dolfin import FunctionSpace, TrialFunction, TestFunction, DirichletBC, Function, solve, cpp, fem

geom = Geometry()

mesh_ele_size = .02
p1 = geom.add_point([0.0, 0.0, 0], lcar=mesh_ele_size)
p2 = geom.add_point([0.0, 1.0, 0], lcar=mesh_ele_size)
p3 = geom.add_point([1.0, 1.0, 0], lcar=mesh_ele_size)
p4 = geom.add_point([1.0, 0.0, 0], lcar=mesh_ele_size)
p5 = geom.add_point([0.2, 0.5, 0], lcar=mesh_ele_size)
p6 = geom.add_point([0.2, 0.7, 0], lcar=mesh_ele_size)
p7 = geom.add_point([1.0, 0.5, 0], lcar=mesh_ele_size)
p8 = geom.add_point([1.0, 0.7, 0], lcar=mesh_ele_size)

l1 = geom.add_line(p1, p4)
l2 = geom.add_line(p3, p2)
l3 = geom.add_line(p2, p1)
l4 = geom.add_line(p7, p5)
l5 = geom.add_line(p5, p6)
l6 = geom.add_line(p6, p8)
l7 = geom.add_line(p4, p7)
from pygmsh.built_in.geometry import Geometry
from pygmsh import generate_mesh
import meshio
import dolfin
import dolfin.io

geom = Geometry()

mesh_ele_size = .1
p0 = geom.add_point([0, 0, 0], lcar=mesh_ele_size)
p1 = geom.add_point([1, 0, 0], lcar=mesh_ele_size)
p2 = geom.add_point([1, 1, 0], lcar=mesh_ele_size)
p3 = geom.add_point([0, 1, 0], lcar=mesh_ele_size)

l0 = geom.add_line(p0, p1)
l1 = geom.add_line(p1, p2)
l2 = geom.add_line(p2, p3)
l3 = geom.add_line(p3, p0)

ll = geom.add_line_loop(lines=[l0, l1, l2, l3])
ps = geom.add_plane_surface(ll)

# Tag line and surface
geom.add_physical(l3, label=444)
geom.add_physical(ps, label=456)

print("\n".join(geom._GMSH_CODE))

mesh = generate_mesh(geom)
points, cells, cell_data = mesh.points, mesh.cells, mesh.cell_data
meshio.write("input/mesh_2d.xdmf",
Exemplo n.º 12
0
def front_mesh(res=0.025):
    geometry = Geometry()
    mesh_r = width_scale * res
    c = geometry.add_point((c_x, c_y, 0))

    # Elliptic obstacle
    p1 = geometry.add_point((c_x - r_x, c_y, 0))
    p2 = geometry.add_point((c_x + r_x, c_y, 0))
    p12 = geometry.add_point((c_x, c_y + 1.4 * r_x, 0))
    p21 = geometry.add_point((c_x, c_y - 1.4 * r_x, 0))

    arc_1 = geometry.add_spline([p1, p12, p2])
    arc_2 = geometry.add_spline([p2, p21, p1])
    # arc_1 = geometry.add_circle_arc(p1, c, p2)
    # arc_2 = geometry.add_circle_arc(p2, c, p1)

    # Surrounding mesh
    p3 = geometry.add_point((c_x - r_x - mesh_r, c_y, 0))
    p4 = geometry.add_point((c_x + r_x + mesh_r, c_y, 0))
    p34 = geometry.add_point((c_x, c_y + 1.4 * r_x + mesh_r, 0))
    p43 = geometry.add_point((c_x, c_y - 1.4 * r_x - mesh_r, 0))
    arc_5 = geometry.add_spline([p3, p34, p4])
    arc_6 = geometry.add_spline([p4, p43, p3])

    # arc_5 = geometry.add_circle_arc(p3, c, p4)
    # arc_6 = geometry.add_circle_arc(p4, c, p3)
    line_front = geometry.add_line(p3, p1)
    line_back = geometry.add_line(p2, p4)
    surface_top = geometry.add_line_loop(
        [line_front, arc_1, line_back, -arc_5])
    surface_bottom = geometry.add_line_loop(
        [line_front, -arc_2, line_back, arc_6])

    obstacle_loop = geometry.add_line_loop([arc_1, arc_2])

    top = geometry.add_plane_surface(surface_top)
    bottom = geometry.add_plane_surface(surface_bottom)
    geometry.add_physical_surface([top, bottom], label=12)
    geometry.add_physical_line(obstacle_loop.lines, label=inner_marker)

    # Create refined mesh around geometry
    field = geometry.add_boundary_layer(edges_list=obstacle_loop.lines,
                                        hfar=res,
                                        hwall_n=res / 3,
                                        thickness=2 * res)
    geometry.add_background_field([field])

    # Generate mesh
    (points, cells, point_data, cell_data,
     field_data) = generate_mesh(geometry,
                                 prune_z_0=True,
                                 geo_filename="meshes/test.geo")

    # Save mesh and mesh-function to file
    meshio.write(
        "meshes/multimesh_1.xdmf",
        meshio.Mesh(points=points, cells={"triangle": cells["triangle"]}))

    meshio.write(
        "meshes/mf_1.xdmf",
        meshio.Mesh(points=points,
                    cells={"line": cells["line"]},
                    cell_data={
                        "line": {
                            "name_to_read": cell_data["line"]["gmsh:physical"]
                        }
                    }))