def plot_all_spk_clusters(self,plot_mean = True,figure_size=(10,10),dpi=600):
"""
Plot all spike cluster. If event list contains HFO raise error.
Parameters
----------
plot_mean: boolean
True (default) - plot mean line
figure_size: tuple
(5,5) (default) - Size of figure, tuple of integers with width, height in inches
dpi: int
600 - DPI resolution
"""
if len(self.event) == 0:
raise Exception('No events to plot')
htypes = self.__getlist__('htype')
if 'HFO' in htypes:
raise Exception('HFO htype not accepted')
cluster = self.__getlist__('cluster')
num_clus = int(np.max(cluster))+1
ncols = int(math.ceil(math.sqrt(num_clus)))
nrows = int(math.floor(math.sqrt(num_clus)))
fig,sb = plt.subplots(nrows,ncols,sharey=True,figsize=figure_size,dpi=dpi)
c = 0
l = 0
for clus in range(num_clus):
if c == ncols:
c = 0
l += 1
plot_spk_cluster(self, clus, ax = sb[l,c])
sb[l,c].set_title('Cluster ' + str(clus))
c +=1
def ploting(self,idx):
clear_output()
if self.event[0].htype == 'Spike':
plot_spk_cluster(self,idx,color=color, spines = spines, plot_mean = plot_mean, figure_size=figure_size, dpi = dpi)
if self.event[0].htype == 'HFO':
evlist = [self.event[x] for x in range(len(self.event)) if self.event[x].cluster==idx]
plot_mean_hfo(evlist, color = color, xlim =xlim, figure_size=figure_size,dpi=dpi,saveplot=saveplot)
plt.suptitle('Cluster ' + str(idx))
def ploting(self,idx,idx2):
clear_output()
evlist = [self.event[x] for x in range(len(self.event)) if self.event[x].cluster==idx and self.event[x].channel == idx2]
if self.event[0].htype == 'Spike':
if len(evlist) > 0:
plot_spk_cluster(self,idx,idx2,color=color, spines = spines, plot_mean = plot_mean, figure_size=figure_size, dpi = dpi, ax=ax)
if self.event[0].htype == 'HFO':
plot_mean_hfo(evlist, color = color, xlim =xlim, figure_size=figure_size,dpi=dpi,saveplot=saveplot)
plt.suptitle('Channel ' + str(idx2) + ', Cluster ' + str(idx) +' (' +str(len(evlist)) +')')
plt.show()
def plot_all_spk_clusters(self,
plot_mean=True,
figure_size=(10, 10),
dpi=600):
"""
Plot all spike cluster. If event list contains HFO raise error.
Parameters
----------
plot_mean: boolean
True (default) - plot mean line
figure_size: tuple
(5,5) (default) - Size of figure, tuple of integers with width, height in inches
dpi: int
600 - DPI resolution
"""
if len(self.event) == 0:
raise Exception('No events to plot')
htypes = self.__getlist__('htype')
if 'HFO' in htypes:
raise Exception('HFO htype not accepted')
cluster = self.__getlist__('cluster')
num_clus = int(np.max(cluster)) + 1
ncols = int(math.ceil(math.sqrt(num_clus)))
nrows = int(math.floor(math.sqrt(num_clus)))
fig, sb = plt.subplots(nrows,
ncols,
sharey=True,
figsize=figure_size,
dpi=dpi)
c = 0
l = 0
for clus in range(num_clus):
if c == ncols:
c = 0
l += 1
plot_spk_cluster(self, clus, ax=sb[l, c])
sb[l, c].set_title('Cluster ' + str(clus))
c += 1
def ploting(self, idx):
clear_output()
if self.event[0].htype == 'Spike':
plot_spk_cluster(self,
idx,
color=color,
spines=spines,
plot_mean=plot_mean,
figure_size=figure_size,
dpi=dpi)
if self.event[0].htype == 'HFO':
evlist = [
self.event[x] for x in range(len(self.event))
if self.event[x].cluster == idx
]
plot_mean_hfo(evlist,
color=color,
xlim=xlim,
figure_size=figure_size,
dpi=dpi,
saveplot=saveplot)
plt.suptitle('Cluster ' + str(idx))
