def create_at_inaturalist(self, access_token, user_agent):
"""Creates a new observation at iNaturalist for this observation
It will update the current object so self.inaturalist_id is properly set.
On the other side, it will also set the vespawatch_id observation field so the observation can be found from
the iNaturalist record.
:param access_token: as returned by pyinaturalist.rest_api.get_access_token(
"""
params_only_for_create = {
'taxon_id': self.taxon.inaturalist_push_taxon_id
} # TODO: with the new sync, does it still makes sense to separate the create/update parameters?
params = {
'observation': {
**params_only_for_create,
**self._params_for_inat()
}
}
r = create_observations(params=params,
access_token=access_token,
user_agent=user_agent)
self.inaturalist_id = r[0]['id']
self.save()
self.push_attached_pictures_at_inaturalist(access_token=access_token,
user_agent=user_agent)
def create_at_inaturalist(self, access_token):
"""Creates a new observation at iNaturalist for this observation
It will update the current object so self.inaturalist_id is properly set.
On the other side, it will also set the vespawatch_id observation field so the observation can be found from
the iNaturalist record.
:param access_token: as returned by pyinaturalist.rest_api.get_access_token(
"""
# TODO: push more fields
# TODO: check the push works when optional fields are missing
params_only_for_create = {
'taxon_id': self.taxon.inaturalist_push_taxon_id
}
params = {
'observation': {
**params_only_for_create,
**self._params_for_inat()
}
}
r = create_observations(params=params, access_token=access_token)
self.inaturalist_id = r[0]['id']
self.save()
self.push_attached_pictures_at_inaturalist(access_token=access_token)
def upload_obs(obs: Observation, token: str):
logger.debug('upload_obs()')
#TODO: Give the observation class a method to generate this JSON
params = {
'observation': {
'taxon_id':
obs.taxon_id,
'species_guess':
obs.taxon_name,
'observed_on_string':
str(obs.observed_on),
'time_zone':
obs.tzone,
'description':
obs.comment,
'tag_list':
obs.tags,
'latitude':
obs.coordinates[0],
'longitude':
obs.coordinates[1],
'positional_accuracy':
obs.geotag_accuracy, # meters,
'geoprivacy':
obs.geotag_privacy,
'observation_field_values_attributes': [{
'observation_field_id': '',
'value': ''
}],
},
}
try:
logger.info('Uploading observation for taxon {0}'.format(obs.taxon_id))
r = create_observations(params=params, access_token=token)
obs.inat_id = r[0]['id']
for file in obs.photos:
r = add_photo_to_observation(observation_id=obs.inat_id,
file_object=open(file, 'rb'),
access_token=token)
except HTTPError as ex:
obs.inat_result = 'Error creating observation: {0}'.format(ex)
logger.error('Bad result from iNaturalist API, skipping this one')
logger.exception(ex)
except Exception as ex:
raise
else:
logger.info('Success')
obs.inat_result = 'ok'
def test_create_observation_fail(requests_mock):
params = {
"observation": {
"species_guess": "Pieris rapae",
# Some invalid data so the observation is rejected...
"observed_on_string": (datetime.now() + timedelta(days=1)).isoformat(),
"latitude": 200,
}
}
requests_mock.post(
"https://www.inaturalist.org/observations.json",
json=load_sample_data("create_observation_fail.json"),
status_code=422,
)
with pytest.raises(HTTPError) as excinfo:
create_observations(params=params, access_token="valid token")
assert excinfo.value.response.status_code == 422
assert "errors" in excinfo.value.response.json() # iNat also give details about the errors
def test_create_observation(requests_mock):
requests_mock.post(
"https://www.inaturalist.org/observations.json",
json=load_sample_data("create_observation_result.json"),
status_code=200,
)
params = {
"observation": {"species_guess": "Pieris rapae"},
}
r = create_observations(params=params, access_token="valid token")
assert len(r) == 1 # We added a single one
assert (
r[0]["latitude"] is None
) # We have the field, but it's none since we didn't submitted anything
assert r[0]["taxon_id"] == 55626 # Pieris Rapae @ iNaturalist
time_zone,
'description':
'This is a test upload',
'tag_list':
'',
'latitude':
coordinates[0],
'longitude':
coordinates[1],
'positional_accuracy':
50, # meters,
'observation_field_values_attributes': [{
'observation_field_id':
'',
'value':
''
}],
},
}
r = create_observations(params=params, access_token=token)
new_observation_id = r[0]['id']
from pyinaturalist.rest_api import add_photo_to_observation
r = add_photo_to_observation(observation_id=new_observation_id,
file_object=open(file, 'rb'),
access_token=token)
print("Program complete")
def upload_folder_multiple(species_folder, folder, uploaded_folder, time_zone,
accuracy, user, passw, app, secret):
# Makes a list of all files in the folder inside element 2 of a tuple
for file in os.walk(folder):
if file[0] == folder:
files = file
# Creates list of all the file paths for every file in the folder.
file_paths = []
for file in files[2]: # All files are in files[2]
file_path = files[0] + file # files[0] has the path to the folder
file_paths.append(file_path) # Makes a big list of paths
# This is getting a token to allow photos to be uploaded.
token = get_access_token(username=user,
password=passw,
app_id=app,
app_secret=secret)
# This goes to every file, checks if it is a jpg, gets the gps coordinates,
# get the time, and uploads it to iNaturalist.
jpgs = []
for file in file_paths:
if file[-3:].lower() == 'jpg':
jpgs.append(file)
try:
img = PIL.Image.open(jpgs[0])
coordinates = get_lat_long(img)
img.close()
except:
coordinates = 'No Coordinates'
try:
date_time = get_date(file)
img.close()
except:
date_time = 'No Date or Time'
[species, taxon] = get_taxon(species_folder)
print(species)
# print(coordinates)
# print(date_time)
# print(' the taxon is ' + str(taxon))
params = {
'observation': {
'taxon_id':
taxon,
'species_guess':
species,
'observed_on_string':
date_time,
'time_zone':
time_zone,
'description':
'',
'tag_list':
'',
'latitude':
coordinates[0],
'longitude':
coordinates[1],
'positional_accuracy':
int(accuracy), # meters,
'observation_field_values_attributes': [{
'observation_field_id': '',
'value': ''
}],
},
}
r = create_observations(params=params, access_token=token)
new_observation_id = r[0]['id']
print('Uploaded as observation #' + str(new_observation_id))
print('Uploading photos')
for file in jpgs:
print('uploading ' + str(file) + ' TO ' + str(new_observation_id))
r = add_photo_to_observation(observation_id=new_observation_id,
file_object=open(file, 'rb'),
access_token=token)
folder_name = os.path.split(folder)
folder1_name = os.path.split(folder_name[0])
folder2_name = os.path.split(folder1_name[0])
new_species_folder = uploaded_folder + folder2_name[1] + '/'
destination = new_species_folder + folder1_name[1]
if new_observation_id:
try:
os.mkdir(new_species_folder)
except:
pass
try:
shutil.move(folder, destination)
except:
print('failed file move')
pass
