def detail(cls, annotation, with_context=True):
item = dict()
if with_context:
item["@context"] = cls.JSONLD_CONTEXT
item["id"] = url_for(
"annotation_detail",
annotation_id=annotation.id,
library_short_name=annotation.patron.library.short_name,
_external=True,
)
item["type"] = "Annotation"
item["motivation"] = annotation.motivation
item["body"] = annotation.content
if annotation.target:
target = json.loads(annotation.target)
compacted = jsonld.compact(target, cls.JSONLD_CONTEXT)
del compacted["@context"]
item["target"] = compacted
if annotation.content:
body = json.loads(annotation.content)
compacted = jsonld.compact(body, cls.JSONLD_CONTEXT)
del compacted["@context"]
item["body"] = compacted
return item
def expand_compact_for_context(wa, context):
'''assumes anno has @context.'''
context = wa['@context']
try:
compacted = jsonld.compact(wa, context, compactArrays=False)
except Exception as e:
msg = 'compaction for context({}) of anno({}) failed: {}'.format(
context, wa['id'], str(e))
raise e
try:
expanded = jsonld.expand(compacted)
except Exception as e:
msg = 'expansion for context({}) of anno({}) failed: {}'.format(
context, wa['id'], str(e))
raise e
try:
translated = jsonld.compact(expanded, context, compactArrays=False)
except Exception as e:
msg = 'translation for context({}) of anno({}) failed: {}'.format(
CATCH_CONTEXT_IRI, wa['id'], str(e))
raise e
return translated
def from_jsonld(cls, data):
"""Instantiate a JSON-LD class from data."""
if isinstance(data, cls):
return data
if not isinstance(data, dict):
raise ValueError(data)
if '@type' in data:
type_ = tuple(sorted(data['@type']))
if type_ in cls.__type_registry__ and getattr(
cls, '_jsonld_type', None) != type_:
new_cls = cls.__type_registry__[type_]
if cls != new_cls:
return new_cls.from_jsonld(data)
if cls._jsonld_translate:
data = ld.compact(data, {'@context': cls._jsonld_translate})
data.pop('@context', None)
data.setdefault('@context', cls._jsonld_context)
if data['@context'] != cls._jsonld_context:
compacted = ld.compact(data, {'@context': cls._jsonld_context})
else:
compacted = data
# assert compacted['@type'] == cls._jsonld_type, '@type must be equal'
# TODO update self(not cls)._jsonld_context with data['@context']
fields = cls._jsonld_fields
return cls(
**{k.lstrip('_'): v
for k, v in compacted.items() if k in fields})
def from_jsonld(
cls,
data,
client=None,
__reference__=None,
__source__=None,
):
"""Instantiate a JSON-LD class from data."""
if isinstance(data, cls):
return data
if not isinstance(data, dict):
raise ValueError(data)
if '@type' in data:
type_ = tuple(sorted(data['@type']))
if type_ in cls.__type_registry__ and getattr(
cls, '_jsonld_type', None) != type_:
new_cls = cls.__type_registry__[type_]
if cls != new_cls:
return new_cls.from_jsonld(data, client=client)
if cls._jsonld_translate:
data = ld.compact(data, {'@context': cls._jsonld_translate})
data.pop('@context', None)
data.setdefault('@context', cls._jsonld_context)
if data['@context'] != cls._jsonld_context:
try:
compacted = ld.compact(data, {'@context': cls._jsonld_context})
except Exception:
compacted = data
else:
compacted = data
for migration in MIGRATIONS:
data = migration(data)
fields = cls._jsonld_fields
data_ = {}
if client:
data_['client'] = client
for k, v in compacted.items():
if k in fields:
data_[k.lstrip('_')] = v
if __reference__:
with with_reference(__reference__):
self = cls(**data_)
else:
self = cls(**data_)
if __source__:
setattr(self, '__source__', __source__)
return self
def compact_uri(uri_list, context):
if isinstance(uri_list, str):
return jsonld.compact({"@type": uri_list}, context)["@type"]
else:
try:
return tuple(
as_list(jsonld.compact({"@type": uri_list}, context)["@type"]))
except Exception as err:
raise Exception(f"{err} uri_list={uri_list} context={context}")
def create_verify_data(data, signature_options):
"""Encapsulate the process of constructing the string used during sign and verify."""
type_ = signature_options.get("type", "Ed25519Signature2018")
if type_ and type_ != "Ed25519Signature2018":
raise SignatureTypeError(f"invalid signature type {type_}.")
signature_options["verificationMethod"] = signature_options.get(
"creator", signature_options.get("verificationMethod"))
if not signature_options.get("verificationMethod"):
raise MissingVerificationMethodError(
"signature_options.verificationMethod is required")
signature_options["created"] = signature_options.get(
"created", _created_at())
[expanded] = jsonld.expand(data)
framed = jsonld.compact(expanded, "https://w3id.org/security/v2",
{"skipExpansion": True})
# Detect any dropped attributes during the expand/contract step.
if len(data) > len(framed):
# > check indicates dropped attrs < is a different error
# attempt to collect error report data
for_diff = jsonld.compact(expanded, data.get("@context"))
dropped = set(data.keys()) - set(for_diff.keys())
raise DroppedAttributeError(
f"{dropped} attributes dropped. "
"Provide definitions in context to correct.")
# Check proof for dropped attributes
attr = [
("proof", "proof"),
("credentialSubject",
"https://www.w3.org/2018/credentials#credentialSubject"),
]
data_context = data.get("@context")
for mapping in attr:
data_attribute = data.get(mapping[0], {})
frame_attribute = framed.get(mapping[1], {})
if len(data_attribute) > len(frame_attribute):
for_diff = jsonld.compact(expanded, data_context)
for_diff_attribute = for_diff.get(mapping[1], {})
dropped = set(data_attribute.keys()) - set(
for_diff_attribute.keys())
raise DroppedAttributeError(
f"in {mapping[0]}, {dropped} attributes dropped. "
"Provide definitions in context to correct.")
canonized_signature_options = _canonize_signature_options(
signature_options)
hash_of_canonized_signature_options = _sha256(canonized_signature_options)
canonized_document = _canonize_document(framed)
hash_of_canonized_document = _sha256(canonized_document)
return (framed,
hash_of_canonized_signature_options + hash_of_canonized_document)
def jsonld(self,
frame=None,
options=None,
context=None,
removeContext=None):
if removeContext is None:
removeContext = Response._context # Loop?
if frame is None:
frame = self._frame
if context is None:
context = self.context
else:
context = self.get_context(context)
# For some reason, this causes errors with pyld
# if options is None:
# options = {"expandContext": context.copy() }
js = self
if frame:
logging.debug("Framing: %s", json.dumps(self, indent=4))
logging.debug("Framing with %s", json.dumps(frame, indent=4))
js = jsonld.frame(js, frame, options)
logging.debug("Result: %s", json.dumps(js, indent=4))
logging.debug("Compacting with %s", json.dumps(context, indent=4))
js = jsonld.compact(js, context, options)
logging.debug("Result: %s", json.dumps(js, indent=4))
if removeContext == context:
del js["@context"]
return js
def rdf2jsonld(self):
"""
Splits Nquads and converts the partitions to JSON-LD compacted document form
"""
# Extract tokens from offset + 1 to <n-th offset after> (n = args.docs)
i = 0
while i < len(self.newdoc) - 1:
if i + self.docs >= len(self.newdoc) - 1:
j = len(self.newdoc) - 1
else:
j = i + self.docs
# Serializing RDF into JSON-LD by method from_rdf results in the so called
# expanded document form, i.e. a format that doesn't contain any namespaces
print("Serializing RDF file to JSON-LD")
expand = jsonld.from_rdf(
self.nquads[self.offsets[self.newdoc[i]] +
1:self.offsets[self.newdoc[j]]])
i = j
# The compacted JSON-LD document form offers the possibility to include a context
# (i.e. namespaces) and thus reduces redundancy
print("Converting to compacted document form")
compacted = jsonld.compact(expand, self.loadjson(self.frame))
# TODO: Insert function to append data of contributors to the bibliographicResource
print("Indexing documents")
for graph in compacted["@graph"]:
if self.extcont is True:
graph["@context"] = path.abspath(args.frame)
else:
graph["@context"] = compacted["@context"]
self.output(graph)
def quads_to_jsonld(quads):
from pyld import jsonld
context = AssemblQuadStorageManager.get_jsonld_context(True)
jsonf = jsonld.from_rdf(quads)
jsonc = jsonld.compact(jsonf, context)
jsonc['@context'] = AssemblQuadStorageManager.get_jsonld_context(False)
return jsonc
def serialize(self):
compacted_json = jsonld.compact({
"http://schema.org/word_id": self.word_id,
"http://schema.org/word": self.word
}, self.get_context())
del compacted_json['@context']
return compacted_json
def rdf2jsonld(self):
"""
Splits Nquads and converts the partitions to JSON-LD compacted document form
"""
# Extract tokens from offset + 1 to <n-th offset after> (n = args.docs)
i = 0
while i < len(self.newdoc) - 1:
if i + self.docs >= len(self.newdoc) - 1:
j = len(self.newdoc) - 1
else:
j = i + self.docs
# Serializing RDF into JSON-LD by method from_rdf results in the so called
# expanded document form, i.e. a format that doesn't contain any namespaces
print("Serializing RDF file to JSON-LD")
expand = jsonld.from_rdf(self.nquads[self.offsets[self.newdoc[i]] + 1:self.offsets[self.newdoc[j]]])
i = j
# The compacted JSON-LD document form offers the possibility to include a context
# (i.e. namespaces) and thus reduces redundancy
print("Converting to compacted document form")
compacted = jsonld.compact(expand, self.loadjson(self.frame))
# TODO: Insert function to append data of contributors to the bibliographicResource
print("Indexing documents")
for graph in compacted["@graph"]:
if self.extcont is True:
graph["@context"] = path.abspath(args.frame)
else:
graph["@context"] = compacted["@context"]
self.output(graph)
def mds_canonicalize(app, data: dict) -> dict:
# language=rst
"""
TODO: Documentation of this vital function.
"""
ctx = mds_context()
# if '@context' not in data:
# _logger.warning("No @context in data to be canonicalized.")
# data['@context'] = ctx
# The expansion is implicitly done in jsonld.compact() below.
# data = jsonld.expand(data)
retval = jsonld.compact(data, ctx)
retval = DATASET.canonicalize(retval)
if 'dcat:distribution' not in retval:
retval['dcat:distribution'] = []
retval['@context'] = ctx
for distribution in retval['dcat:distribution']:
if 'ams:distributionType' in distribution:
if distribution['ams:distributionType'] != 'file':
distribution.pop('dcat:mediaType', None)
distribution.pop('dcat:mediaType', None)
if distribution['ams:distributionType'] != 'file':
distribution.pop('dct:byteSize', None)
if distribution['ams:distributionType'] != 'api':
distribution.pop('ams:serviceType', None)
return retval
def find_id_in_jsonld(json_string, jsonld_options):
input_data = json.loads(json_string)
result = jsonld.compact(input_data,
OPENBADGES_CONTEXT_V2_URI,
options=jsonld_options)
node_id = result.get('id', '')
return node_id
def parse_field(field_key, field_value, r_list):
"""
Return a field as a key/value pair, normalising the keys to qnames, and the value to a single value,
based on the o:id, @id and o:label, in that order.
Return None, None for fields that don't fit this pattern.
:param field_value: value for field
:param field_key: key for field
:param r_list: row list
:return: key, value
"""
# if field_key == u'o:id':
# return 'dcterms:identifier', field_value # don't try to compact @ids
if field_key == '@id':
return None, None
# compact using master context to reduce to qnames
ck = jsonld.compact({field_key: field_value}, master_context)
del (ck['@context']) # remove the context
if ck:
for k, v in ck.items():
if k == 'dcterms:hasPart':
for z in v:
parse_expanded([z], row_list=r_list)
return k, ';'.join([y['dcterms:identifier'] for y in v])
if isinstance(v, dict):
for x in ['o:id', '@id', 'o:label']:
if x in v:
return k, v[x]
return None, None
else:
return k, v
def to_jsonld(self):
"""
Use metadata_standard.specification_root to build an expanded jsonld
metadata record
"""
namespaced = {
'dct:title': self.title,
'dbpedia:StartDateTime': self.start_datetime.isoformat(),
'dbpedia:EndDateTime': self.end_datetime.isoformat(),
'dcat:accessURL':
'https://mt.northwestknowledge.net'
'/lidd/api/metadata/{}'.format(self.id),
'dcat:downloadURL':
'https://mt.northwestknowledge.net'
'/lidd/api/metadata/{}/raw'.format(self.id),
'void:dataDump':
'https://mt.northwestknowledge.net'
'/lidd/api/metadata/{}/rdf'.format(self.id)
}
context = HCLS_PLUS_CONTEXT
return jsonld.compact(namespaced, context, {'expandContext': context})
def quads_to_jsonld(quads):
from pyld import jsonld
context = AssemblQuadStorageManager.get_jsonld_context(True)
jsonf = jsonld.from_rdf(quads)
jsonc = jsonld.compact(jsonf, context)
jsonc['@context'] = AssemblQuadStorageManager.get_jsonld_context(False)
return jsonc
def rdf2es(self, string, bibo):
"""
Does the really interesting stuff: Transformation of the
triples by subject and indexing in ES
:param string: The RDF triples as a concatenated string.
:param bibo: Is subject a bibo:Document?
:return: Body for ES indexing
"""
g = Graph().parse(data=string)
jldstr = g.serialize(format='json-ld',
indent=4)
if bibo:
esdoc = jsonld.compact(loads(jldstr.decode('utf-8')), self.loadjson(self.frame))
doctype = 'document'
else:
esdoc = loads(jldstr.decode('utf-8'))
esdoc = jsonld.frame(esdoc, self.loadjson(self.frame))['@graph'][0]
esdoc['@context'] = self.loadjson(self.frame)['@context']
doctype = 'bibliographicResource'
docid = re.findall('\w{9}', esdoc['@id'])[0]
if self.filemode:
bulkfile = [{'index': {'_index': self.index, '_type': doctype, '_id': docid}}, esdoc]
return bulkfile
else:
esdoc.update({'_index': self.index, '_type': doctype, '_id': docid})
return esdoc
def jsonld(self, frame=None, options=None,
context=None, removeContext=None):
if removeContext is None:
removeContext = Response._context # Loop?
if frame is None:
frame = self._frame
if context is None:
context = self.context
else:
context = self.get_context(context)
# For some reason, this causes errors with pyld
# if options is None:
# options = {"expandContext": context.copy() }
js = self
if frame:
logging.debug("Framing: %s", json.dumps(self, indent=4))
logging.debug("Framing with %s", json.dumps(frame, indent=4))
js = jsonld.frame(js, frame, options)
logging.debug("Result: %s", json.dumps(js, indent=4))
logging.debug("Compacting with %s", json.dumps(context, indent=4))
js = jsonld.compact(js, context, options)
logging.debug("Result: %s", json.dumps(js, indent=4))
if removeContext == context:
del js["@context"]
return js
def query_ld(q, limit=None, connection=None):
if connection is None:
connection = get_connection()
ld = connection.query(q, limit=limit)
return ld if ld.get('names') is not None and ld.get(
'values') is not None else jsonld.compact(ld, connection.context)
def usePyld():
try:
jsonld
except:
print "=== can't do pyld demos' as package pyld isn't installed - Download and install from https://github.com/digitalbazaar/pyld"
return
# Grab the vitals
query = {"fmql": "DESCRIBE 120_5 FILTER(.02=2-9&.01>2008-04-01)", "format": "JSON-LD"}
queryURL = FMQLEP + "?" + urllib.urlencode(query)
jreply = json.loads(urllib2.urlopen(queryURL).read())
json.dump(jreply, open("fmql_FMQL.json", "w"), indent=2)
# nix all but @graph and @context
jreply = {"@context": jreply["@context"], "@graph": jreply["@graph"]}
# Let's produce different forms of JSON-LD (and RDF) from this
# 1. Expanded form
print "pyld expand ..."
expanded = jsonld.expand(jreply)
json.dump(expanded, open("pyld_EXP_FMQLEX.json", "w"), indent=2)
# 2. Compact it - using the basic context
print "pyld compact ..."
compact = jsonld.compact(jreply, {"livevista": "http://livevista.caregraf.info/"})
json.dump(compact, open("pyld_COMP_FMQLEX.json", "w"), indent=2)
# 3. Dump RDF -- only nquads are supported ... others return errors
print "pyld tordf ..."
open("pyld_RDF_FMQLEX.rdf", "w").write(jsonld.to_rdf(jreply, {"format": "application/nquads"}))
print
def translate_distribution_item(b2file, filecontent):
context = {
# ontologies used in FDP according to spec
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"dcat": "http://www.w3.org/ns/dcat#",
"xsd": "http://www.w3.org/2001/XMLSchema#",
"owl": "http://www.w3.org/2002/07/owl#",
"dct": "http://purl.org/dc/terms/",
"lang": "http://id.loc.gov/vocabulary/iso639-1/",
"fdp": "http://rdf.biosemantics.org/ontologies/fdp-o#",
"foaf": "http://xmlns.com/foaf/",
"b2": "https://b2share.eudat.eu/ontology/b2share/"
}
doc = {
"@id": filecontent.links.selflink,
"@type": "dcat:Distribution",
#"http://purl.org/dc/terms/identifier": b2file.identifier,
"http://purl.org/dc/terms/issued": filecontent.created,
"http://purl.org/dc/terms/modified": filecontent.updated,
"http://purl.org/dc/terms/title": filecontent.key,
#"http://purl.org/dc/terms/license": filecontent.key, --> license is set up in the dataset level (level 3)
"http://purl.org/dc/terms/hasVersion": filecontent.version_id,
"http://purl.org/dc/terms/versionOf": b2file.links.selflink
}
return jsonld.compact(doc, context)
def serialize(self):
compacted_json = jsonld.compact({
"http://schema.org/player_id": self.player_id,
"http://schema.org/username": self.username
}, self.get_context())
del compacted_json['@context']
return compacted_json
def jsonld(self,
with_context=True,
context_uri=None,
prefix=None,
expanded=False):
ser = self.serializable()
result = jsonld.compact(ser,
self._context,
options={
'base': prefix,
'expandContext': self._context,
'senpy': prefix
})
if context_uri:
result['@context'] = context_uri
if expanded:
result = jsonld.expand(result,
options={
'base': prefix,
'expandContext': self._context
})
if not with_context:
del result['@context']
return result
def serialize(self):
compacted_json = jsonld.compact(
{
"http://schema.org/first_name":
self.first_name,
"http://schema.org/last_name":
self.last_name,
"http://schema.org/id":
self.id,
"http://schema.org/email":
self.email,
"http://schema.org/birthDate":
self.birthday.isoformat() if self.birthday else "",
"http://schema.org/telephone":
self.phone,
"http://schema.org/languages":
self.languages,
"http://schema.org/skills":
self.skills,
"http://schema.org/nr_of_reviews":
len(self.reviews),
"http://schema.org/nr_of_interviews":
len(self.interviews)
}, self.get_context())
#print(compacted_json)
return compacted_json
def usePyld():
# Grab the vitals used in frame 1
query = {"fmql": "DESCRIBE 120_5 FILTER(.02=2-9&.01>2008-04-01)", "format": "JSON-LD"}
queryURL = FMQLEP + "?" + urllib.urlencode(query)
jreply = json.loads(urllib2.urlopen(queryURL).read())
json.dump(jreply, open("fmql_FMQL_F1.json", "w"), indent=2)
# Grab the vitals used in frame 2
query = {"fmql": "DESCRIBE 120_5 FILTER(.02=2-9&.01>2008-04-01)", "format": "JSON-LD2"}
queryURL = FMQLEP + "?" + urllib.urlencode(query)
jreply = json.loads(urllib2.urlopen(queryURL).read())
json.dump(jreply, open("fmql_FMQL_F2.json", "w"), indent=2)
# Let's produce different forms of JSON-LD (and RDF) from this
# 1. Expanded form
print "pyld expand ..."
expanded = jsonld.expand(jreply)
json.dump(expanded, open("pyld_EXP_FMQLEX.json", "w"), indent=2)
# 2. Compact it - using the basic context of framing 1
print "pyld compact ..."
compact = jsonld.compact(jreply, json.load(open("vsfmcontextBase.json")))
json.dump(compact, open("pyld_COMP_FMQLEX.json", "w"), indent=2)
# 3. Dump RDF -- only nquads are supported ... others return errors
print "pyld tordf ..."
open("pyld_RDF_FMQLEX.rdf", "w").write(jsonld.to_rdf(jreply, {"format": "application/nquads"}))
def compact_entity_params(attr, context, compacted_dict, app):
"""Apply compaction output"""
context_list = []
attr_key = attr
default_context_compact = 'https://uri.etsi.org/ngsi-ld/default-context/'
try:
if attr in compacted_dict:
return compacted_dict[attr]
if default_context_compact in attr:
attr = attr.replace(default_context_compact, '')
compacted_dict[attr_key] = attr
return attr
if context:
if context in app.context_dict.keys():
context_list.append(app.context_dict[context])
else:
context_list.append(context)
context_list.append(app.context_dict[default_context])
con = {"@context": context_list}
com = {attr: attr}
compacted = jsonld.compact(com, con)
attr = list(compacted.keys())[1]
compacted_dict[attr_key] = attr
except Exception as e:
app.logger.error("Error: compact_entity_params")
app.logger.error(traceback.format_exc())
return attr
def compact_object(jsonobject):
if isinstance(jsonobject, list) and len(jsonobject) == 1:
jsonobject = jsonobject[0]
if isinstance(jsonobject, dict):
if (record_field
and record_field in jsonobject) or (record_field is None):
compacted = jsonld.compact(jsonobject, context,
{'skipExpansion': True})
if context_url:
compacted['@context'] = context_url
for date in ["definition"]:
if isinstance(compacted.get(date), str):
compacted.pop(date)
if isinstance(compacted.get("gndIdentifier"), list):
compacted["gndIdentifier"] = compacted.pop(
"gndIdentifier")[0]
# for fix in ["definition"]:
# if isinstance(compacted.get("fix"),(dict,list)):
# compacted.pop(fix)
if (node and compacted.get("@id")
and compacted.get("@id").startswith("_:")) or (
node and compacted.get("id")
and compacted.get("id").startswith("_:")):
# avoid raceconditions
with gzip.open(
pathprefix + str(current_process().name) +
"-bnodes.ldj.gz", "at") as fileout:
fileout.write(json.dumps(compacted, indent=None) + "\n")
else:
with gzip.open(
pathprefix + str(current_process().name) + ".ldj.gz",
"at") as fileout:
_id = compacted.pop("id")
compacted["id"] = _id.split("/")[-1]
fileout.write(json.dumps(compacted, indent=None) + "\n")
def detect_type(value, allowed_types=None):
"""
Detect type of `value`, optionally subject to `allowed_types`.
Return tuple of detected value and type.
"""
detected_value = value
detected_type = None
if isinstance(value, six.string_types):
return detect_raw_type(value, allowed_types)
if isinstance(value, dict):
detected_type = 'json'
result = jsonld.compact(
value, OPENBADGES_CONTEXT_V2_URI, options=OB_OPTIONS.get('jsonld_options')
)
id_url = result.get('id','')
if ob_utils.is_url(id_url):
detected_value = id_url
detected_type = 'url'
if not detected_type:
raise Exception('unknown type')
if allowed_types:
assert detected_type in allowed_types, 'unhandled type "%s"' % detected_type
return (detected_value, detected_type)
def process_all_imdb(cursor, imdb):
for i, mid in enumerate(get_movies_to_process(cursor)):
print "// %d movies processed." % i
movie = get_jsonld_from_imdb(imdb, mid)
movie = jsonld.compact(movie, 'http://schema.org/')
print json.dumps(movie, indent=4)
def serialize(self):
""" Creates dictionary representation of object """
compacted_json = jsonld.compact(
{
"http://schema.org/first_name":
self.first_name,
"http://schema.org/last_name":
self.last_name,
"http://schema.org/id":
self.id,
"http://schema.org/email":
self.email,
"http://schema.org/birthDate":
self.birthday.isoformat() if self.birthday else "",
"http://schema.org/telephone":
self.phone,
"http://schema.org/languages":
self.languages,
"http://schema.org/number_of_reviews":
len(self.reviews),
"http://schema.org/number_of_interviews":
len(self.interviews)
}, self.get_context())
return compacted_json
def jsonld_compact_data(state, task_meta, **options):
try:
data = task_meta.get('data')
if data and not sys.version[:3] < '3' and not isinstance(
data, six.string_types):
data = data.decode()
input_data = json.loads(data)
expected_class = task_meta.get('expected_class')
except TypeError:
return task_result(False, "Could not load data")
selected_options = options.get('jsonld_options', jsonld_use_cache)
selected_options['documentLoader'].contexts = set()
result = jsonld.compact(input_data,
OPENBADGES_CONTEXT_V2_URI,
options=selected_options)
new_contexts = list(selected_options['documentLoader'].contexts.copy())
node_id = result.get('id',
task_meta.get('node_id', get_next_blank_node_id()))
# Handle mismatch between URL node source and declared ID.
if result.get('id') and task_meta.get(
'node_id') and result['id'] != task_meta['node_id']:
refetch_action = add_task(FETCH_HTTP_NODE, url=result['id'])
if expected_class:
refetch_action['expected_class'] = expected_class
actions = [
report_message(
"Node fetched from source {} declared its id as {}".format(
task_meta['node_id'], node_id),
MESSAGE_LEVEL_WARNING,
success=False),
delete_outdated_node_tasks(task_meta['node_id']), refetch_action
]
if task_meta.get('source_node_path'):
actions.append(
patch_node_reference(task_meta['source_node_path'], node_id))
return task_result(
True,
"Successfully compacted node {} from source {} and found ID mismatch"
.format(node_id, task_meta['node_id']), actions)
actions = [add_node(node_id, data=result)] + _get_extension_actions(
result, [node_id], new_contexts)
if expected_class:
actions.append(
add_task(VALIDATE_EXPECTED_NODE_CLASS,
node_id=node_id,
expected_class=expected_class))
elif task_meta.get('detectAndValidateClass', True):
actions.append(
add_task(DETECT_AND_VALIDATE_NODE_CLASS, node_id=node_id))
return task_result(True, "Successfully compacted node {}".format(node_id),
actions)
def compact_and_clean(self, js):
newjs = compact(js, context_js)
newjs['@context'] = context
if newjs.has_key("@graph"):
for k,v in newjs['@graph'].items():
newjs[k] = v
del newjs['@graph']
return newjs
def compact_with_json_ld_context(input_json, document_loader=None):
options = {}
if document_loader:
options['documentLoader'] = document_loader
with open(JSON_LD_CONTEXT_V1_2) as context_f:
ctx = json.load(context_f)
compacted = jsonld.compact(input_json, ctx, options=options)
return compacted
def from_graph(
data: Graph,
type: Optional[Union[str, List]] = None,
frame: Dict = None,
model_context: Optional[Context] = None
) -> Union[Resource, List[Resource]]:
from collections import OrderedDict
if not type:
_types = data.triples(
(None, RDF.type, None)) # type of data to transform to JSONLD
_types = [str(_type[2]) for _type in _types]
else:
_types = type
# to get curies as keys when the model context is not used
graph_n3 = data.serialize(format="n3")
graph_n3 = Graph().parse(data=graph_n3, format="n3")
graph_string = graph_n3.serialize(format="json-ld",
auto_compact=True,
indent=2)
graph_json = json.loads(graph_string)
if model_context:
context = model_context.document
else:
context = graph_json[CONTEXT]
if not frame:
frame = {"@context": context, "@type": _types, "@embed": True}
framed = jsonld.frame(graph_json, frame)
framed = _graph_free_jsonld(framed)
if isinstance(framed, list):
framed = [
jsonld.compact(item,
ctx=context,
options={'processingMode': 'json-ld-1.1'})
for item in framed
]
else:
framed = jsonld.compact(framed,
ctx=context,
options={'processingMode': 'json-ld-1.1'})
return from_jsonld(framed)
def serialize_in_json(g, uri):
context = build_graph_context(g)
cg = skolemize(g)
ted_nquads = cg.serialize(format='nquads')
ld = jsonld.from_rdf(ted_nquads)
type = list(cg.objects(uri, RDF.type)).pop()
ld = jsonld.frame(ld, {'context': context, '@type': str(type)})
return json.dumps(jsonld.compact(ld, context), indent=3, sort_keys=True)
def convert(anno):
# check we're already parsed
if not type(anno) == dict:
anno = json.loads(anno)
# rdf = expand(anno)
reframed = frame(anno, annoframe)
outjs = compact(reframed, contextURI)
return outjs
def fix_iiif(manifests):
with open('contexts/iiif2-jsonld11.json') as f:
ctx = json.load(f)
manifests = jsonld.compact( manifests, ctx )
manifests = patch_image_service(manifests)
manifests["@context"] = "http://iiif.io/api/presentation/2/context.json"
return manifests
def serialize(self):
compacted_json = jsonld.compact({
"http://schema.org/note_id": self.note_id,
"http://schema.org/book_id": self.book_id,
"http://schema.org/user_id": self.user_id,
"http://schema.org/notes": self.notes
}, self.get_context())
del compacted_json['@context']
return compacted_json
def dump(self, obj):
"""Compact JSON according to context."""
rec = copy.deepcopy(super(JSONLDSerializer, self).dump(obj))
rec.update(self.context)
compacted = jsonld.compact(rec, self.context)
if not self.expanded:
return compacted
else:
return jsonld.expand(compacted)[0]
def transform_jsonld(self, obj):
"""Compact JSON according to context."""
rec = copy.deepcopy(obj)
rec.update(self.context)
compacted = jsonld.compact(rec, self.context)
if not self.expanded:
return compacted
else:
return jsonld.expand(compacted)[0]
def record2jsonld(record, context):
from pyld import jsonld
import json
import rdflib_jsonld
from rdflib import Graph
import copy
rec = copy.deepcopy(record)
rec.update(context)
compacted = jsonld.compact(rec, context)
return jsonld.expand(compacted)
def quads_to_jsonld(self, quads):
from pyld import jsonld
context = json.load(open(join(dirname(__file__), 'ontology',
'context.jsonld')))
server_uri = self.local_uri()
context["@context"]['local'] = server_uri
jsonf = jsonld.from_rdf(quads)
jsonc = jsonld.compact(jsonf, context)
jsonc['@context'] = [
context_url, {'local': server_uri}]
return jsonc
def clean_jsonld(self, js, uri): if type(js) == list: # find actual object # NB for fcr:metadata it's not retrieved URI for o in js: if o['@id'] == uri or (self.context.id_alias and o.get(self.context.id_alias, '') == uri): js = o break js = jsonld.compact(js, self.context.data) del js['@context'] return js
def detail(cls, annotation, with_context=True):
item = dict()
if with_context:
item["@context"] = cls.JSONLD_CONTEXT
item["id"] = url_for("annotation_detail", annotation_id=annotation.id,
library_short_name=annotation.patron.library.short_name,
_external=True)
item["type"] = "Annotation"
item["motivation"] = annotation.motivation
item["body"] = annotation.content
if annotation.target:
target = json.loads(annotation.target)
compacted = jsonld.compact(target, cls.JSONLD_CONTEXT)
del compacted["@context"]
item["target"] = compacted
if annotation.content:
body = json.loads(annotation.content)
compacted = jsonld.compact(body, cls.JSONLD_CONTEXT)
del compacted["@context"]
item["body"] = compacted
return item
def rdf_to_jsonld(self, rdf, fmt):
g = ConjunctiveGraph()
g.parse(data=rdf, format=fmt)
out = g.serialize(format='json-ld')
j2 = json.loads(out)
j2 = {"@context": context_js, "@graph": j2}
framed = frame(j2, frame_js)
out = compact(framed, context_js)
# recursively clean blank node ids
#out = self._clean_bnode_ids(out)
return out
def test_json_ld(self, book_context, book_schema, simple_book_record):
from pyld import jsonld
import json
import rdflib_jsonld
from rdflib import Graph
import copy
rec = copy.deepcopy(simple_book_record)
rec.update(book_context)
compacted = jsonld.compact(rec, book_context)
expanded = jsonld.expand(compacted)
graph = Graph().parse(data=json.dumps(expanded, indent=2), format="json-ld")
print(graph.serialize(format="json-ld"))
def convert(context, src, dest):
#context = abspath(context)
with open(context) as f:
context = load(f)
g = ConjunctiveGraph()
with open(src) as f:
g.parse(data=f.read(), format='trig')
with open(dest, 'w') as f:
# f.write(g.serialize(format='json-ld', indent=4, context=context))
# Bug in rdflib: Above loses the TextPositionSelector.
quads = g.serialize(format='nquads')
json = jsonld.from_rdf(quads)
jsonc = jsonld.compact(json, context)
dump(jsonc, f, indent=" ")
def convert(input_path, output_path):
skos = jsonld.from_rdf(get_skos(input_path).decode('unicode_escape').encode('utf-8','ignore'))
context = {
"@vocab": "http://www.w3.org/2004/02/skos/core#",
"name": {
"@id": "http://www.w3.org/2004/02/skos/core#prefLabel",
"@container": "@set"
},
"alternateName": {
"@id": "http://www.w3.org/2004/02/skos/core#altLabel",
"@container": "@set"
},
"narrower": {
"@id": "http://www.w3.org/2004/02/skos/core#narrower",
"@container": "@set"
},
"description": {
"@id": "http://purl.org/dc/terms/description",
"@container": "@set"
},
"scopeNote": {
"@container": "@set"
},
"notation": {
"@container": "@set"
},
"publisher": "http://purl.org/dc/terms/publisher",
"title": "http://purl.org/dc/terms/title",
"preferredNamespacePrefix": "http://purl.org/vocab/vann/preferredNamespacePrefix",
"preferredNamespaceUri": "http://purl.org/vocab/vann/preferredNamespaceUri",
"source": "http://purl.org/dc/terms/source"
}
frame = {
"@context": context,
"@type": "ConceptScheme",
"@explicit": True,
"hasTopConcept": {
"@type": "Concept",
"narrower": {
"@type": "Concept"
}
}
}
framed = jsonld.compact(jsonld.frame(skos, frame), context)
del framed['@context']
with open(output_path, 'w') as output_file:
json.dump(framed, output_file, indent=2, ensure_ascii=False)
print "Wrote data for " + input_path + " to " + output_path
def compacted_jsonld(self):
"""Return the ontology in compacted JSON-LD format as an object."""
content = {'content': self.triples}
conn = HTTPConnection('rdf-translator.appspot.com')
# conn.set_debuglevel(1)
conn.request('POST', '/convert/n3/json-ld/content', urllib.urlencode(content))
response = conn.getresponse()
assert response.status == 200
expanded = json.load(response)
compacted = jsonld.compact(expanded, self.context)
# print json.dumps(compacted,indent=4)
compacted['@graph'] = sorted(compacted['@graph'], key=lambda x: x['@id'])
return compacted
def _rdf_to_jsonld(self, b):
fmt = request.headers['Content-Type']
if self.rdflib_format_map.has_key(fmt):
rdftype = self.rdflib_format_map[fmt]
g = Graph()
g.parse(data=b, format=rdftype)
out = g.serialize(format='json-ld')
# AND THIS IS WHERE IT GETS CRAAAAAZEEEE...
# aka rdflib doesn't do framing so we re-re-parse it
j2 = json.loads(out)
j2 = {"@context": self.default_context, "@graph": j2}
framed = frame(j2, self.annoframe)
out = compact(framed, self.default_context)
# recursively clean blank node ids
out = self._clean_bnode_ids(out)
return out
def compact_json(metadata, context=DEFAULT_CONTEXT):
"""
Compact json with supplied context.
Note: Free floating" nodes are removed (eg a key just named
"bazzzzzz" which isn't specified in the context... something like
bazzzzzz:blerp will stay though. This is jsonld.compact behavior.
"""
compacted = jsonld.compact(
metadata, context,
options={
"documentLoader": load_context,
# This allows for things like "license" and etc to be preserved
"expandContext": context,
"keepFreeFloatingNodes": False})
return compacted
def serialize(self):
compacted_json = jsonld.compact({
"http://schema.org/first_name": self.first_name,
"http://schema.org/last_name": self.last_name,
"http://schema.org/id": self.id,
"http://schema.org/email": self.email,
"http://schema.org/birthDate": self.birthday.isoformat() if self.birthday else "",
"http://schema.org/telephone": self.phone,
"http://schema.org/languages": self.languages,
"http://schema.org/skills":self.skills,
"http://schema.org/nr_of_reviews": len(self.reviews),
"http://schema.org/nr_of_interviews": len(self.interviews)
}, self.get_context())
#print(compacted_json)
return compacted_json
def get_jsonld(self, context, new_context={}, format="full"):
"""Return the JSON-LD serialization.
:param: context the context to use for raw publishing; each SmartJsonLD
instance is expected to have a default context associated.
:param: new_context the context to use for formatted publishing,
usually supplied by the client; used by the 'compacted', 'framed',
and 'normalized' formats.
:param: format the publishing format; can be 'full', 'inline',
'compacted', 'expanded', 'flattened', 'framed' or 'normalized'.
Note that 'full' and 'inline' are synonims, referring to the
document form which includes the context; for more information see:
[http://www.w3.org/TR/json-ld/]
"""
from pyld import jsonld
if isinstance(context, six.string_types):
ctx = self.get_context(context)
elif isinstance(context, dict):
ctx = context
else:
raise TypeError('JSON-LD context must be a string or dictionary')
try:
doc = self.translate(context, ctx)
except NotImplementedError:
# model does not require translation
doc = self.dumps(clean=True)
doc["@context"] = ctx
if format in ["full", "inline"]:
return doc
if format == "compacted":
return jsonld.compact(doc, new_context)
elif format == "expanded":
return jsonld.expand(doc)
elif format == "flattened":
return jsonld.flatten(doc)
elif format == "framed":
return jsonld.frame(doc, new_context)
elif format == "normalized":
return jsonld.normalize(doc, new_context)
raise ValueError('Invalid JSON-LD serialization format')
def compact(document, context=None, base=None, remove_context=False):
"""Compact OA JSON-LD, shortening forms according to context."""
# See http://www.w3.org/TR/json-ld-api/#compaction
if context is None:
context = default_context()
if base is None:
base = default_base()
options = {}
if base is not None:
options['base'] = base
compacted = jsonld.compact(document, context, options)
if remove_context:
try:
del compacted['@context']
except KeyError:
pass
return compacted
def jsonld(self,
with_context=True,
context_uri=None,
prefix=None,
expanded=False):
ser = self.serializable()
result = jsonld.compact(
ser,
self._context,
options={
'base': prefix,
'expandContext': self._context,
'senpy': prefix
})
if context_uri:
result['@context'] = context_uri
if expanded:
result = jsonld.expand(
result, options={'base': prefix,
'expandContext': self._context})
if not with_context:
del result['@context']
return result
def main(self):
print('PyLD Unit Tests')
print('Use -h or --help to view options.')
# add program options
self.parser.add_option('-f', '--file', dest='file',
help='The single test file to run', metavar='FILE')
self.parser.add_option('-d', '--directory', dest='directory',
help='The directory full of test files', metavar='DIR')
self.parser.add_option('-e', '--earl', dest='earl',
help='The filename to write the EARL report to', metavar='EARL')
self.parser.add_option('-v', '--verbose', dest='verbose',
action='store_true', default=False,
help='Prints verbose test data')
# parse options
(self.options, args) = self.parser.parse_args()
# check if file or directory were specified
if self.options.file == None and self.options.directory == None:
raise Exception('No test file or directory specified.')
# check if file was specified, exists, and is file
if self.options.file is not None:
if (os.path.exists(self.options.file) and
os.path.isfile(self.options.file)):
# add manifest file to the file list
self.manifest_files.append(os.path.abspath(self.options.file))
else:
raise Exception('Invalid test file: "%s"' % self.options.file)
# check if directory was specified, exists and is dir
if self.options.directory is not None:
if (os.path.exists(self.options.directory) and
os.path.isdir(self.options.directory)):
# load manifest files from test directory
for test_dir, dirs, files in os.walk(self.options.directory):
for manifest in files:
# add all .jsonld manifest files to the file list
if (manifest.find('manifest') != -1 and
manifest.endswith('.jsonld')):
self.manifest_files.append(
join(test_dir, manifest))
else:
raise Exception('Invalid test directory: "%s"' %
self.options.directory)
# see if any manifests have been specified
if len(self.manifest_files) == 0:
raise Exception('No manifest files found.')
passed = 0
failed = 0
total = 0
# run the tests from each manifest file
for manifest_file in self.manifest_files:
test_dir = os.path.dirname(manifest_file)
manifest = json.load(open(manifest_file, 'r'))
count = 1
for test in manifest['sequence']:
# skip unsupported types
skip = True
test_type = test['@type']
for tt in test_type:
if tt in SKIP_TEST_TYPES:
skip = True
break
if tt in TEST_TYPES:
skip = False
if skip:
# print 'Skipping test: "%s" ...' % test['name']
continue
print('JSON-LD/%s %04d/%s...' % (
manifest['name'], count, test['name']), end=' ')
total += 1
count += 1
# read input file
with open(join(test_dir, test['input'])) as f:
if test['input'].endswith('.jsonld'):
input = json.load(f)
else:
input = f.read().decode('utf8')
# read expect file
with open(join(test_dir, test['expect'])) as f:
if test['expect'].endswith('.jsonld'):
expect = json.load(f)
else:
expect = f.read().decode('utf8')
result = None
# JSON-LD options
options = {
'base': 'http://json-ld.org/test-suite/tests/' +
test['input'],
'useNativeTypes': True
}
success = False
try:
if 'jld:ExpandTest' in test_type:
result = jsonld.expand(input, options)
elif 'jld:CompactTest' in test_type:
ctx = json.load(open(join(test_dir, test['context'])))
result = jsonld.compact(input, ctx, options)
elif 'jld:FlattenTest' in test_type:
result = jsonld.flatten(input, None, options)
elif 'jld:FrameTest' in test_type:
frame = json.load(open(join(test_dir, test['frame'])))
result = jsonld.frame(input, frame, options)
elif 'jld:FromRDFTest' in test_type:
result = jsonld.from_rdf(input, options)
elif 'jld:ToRDFTest' in test_type:
options['format'] = 'application/nquads'
result = jsonld.to_rdf(input, options)
elif 'jld:NormalizeTest' in test_type:
options['format'] = 'application/nquads'
result = jsonld.normalize(input, options)
# check the expected value against the test result
success = deep_compare(expect, result)
if success:
passed += 1
print('PASS')
else:
failed += 1
print('FAIL')
if not success or self.options.verbose:
print('Expect:', json.dumps(expect, indent=2))
print('Result:', json.dumps(result, indent=2))
except jsonld.JsonLdError as e:
print('\nError: ', e)
failed += 1
print('FAIL')
# add EARL report assertion
EARL['subjectOf'].append({
'@type': 'earl:Assertion',
'earl:assertedBy': EARL['doap:developer']['@id'],
'earl:mode': 'earl:automatic',
'earl:test': ('http://json-ld.org/test-suite/tests/' +
os.path.basename(manifest_file) + test.get('@id', '')),
'earl:result': {
'@type': 'earl:TestResult',
'dc:date': datetime.datetime.utcnow().isoformat(),
'earl:outcome': ('earl:' + 'passed' if success else
'failed')
}
})
if self.options.earl:
f = open(self.options.earl, 'w')
f.write(json.dumps(EARL, indent=2))
f.close()
print('Done. Total:%d Passed:%d Failed:%d' % (total, passed, failed))
(options, args) = parser.parse_args()
if len(args) != 1:
parser.error("Error: incorrect number of arguments, try --help")
doc = get_demo_record(file_name=args[0], verbose=options.verbose)
validate(doc)
if options.verbose:
from rerodoc.dojson.book import book2marc
print(json.dumps(book2marc.do(doc), indent=2))
from rerodoc.dojson.utils import get_context
context = get_context("book")
doc.update(context)
if options.verbose:
print("Input record in json format:")
print(json.dumps(doc, indent=2))
compacted = jsonld.compact(doc, context)
#print compacted
expanded = jsonld.expand(compacted)
#import pprint
#pprint.pprint(expanded)
#flattened = jsonld.flatten(doc)
#framed = jsonld.frame(doc, context)
#normalized = jsonld.normalize(doc, {'format': 'application/nquads'})
graph = Graph().parse(data=json.dumps(compacted, indent=2), format="json-ld")
print(graph.serialize(format=options.format))
def compact(self):
return jsonld.compact(self, self.get_context(self.context))
?producer ldbmovie:producer_name ?producer_name .
?rating ldbmovie:content_rating_name ?rating_str .
?genre ldbmovie:film_genre_name ?genre_name .
?director ldbmovie:director_name ?director_name .
}
}
"""
)
# As os july/2015, LinkedMDB's sparql endpoint did not support JSON-LD.
sparql.setReturnFormat(Wrapper.N3)
response = sparql.query()
if "response" not in dir(response):
print response
sys.exit()
n3 = "".join(response.response.readlines())
print n3
g = Graph()
movie = json.loads(g.parse(data=n3, format="n3").serialize(format="json-ld"))
context = "http://schema.org/"
movie = jsonld.compact(movie, {"@context": context})
print json.dumps(movie, indent=4)