line = str("#PBS -r n") + "\n"
f.write(line)
line = (str("#PBS -l nodes=") + str(nnodes) + str(":") +
str("ppn=") + str(int(float(nprocs) / float(nnodes))) +
"\n")
f.write(line)
dir = str(os.getcwd())
line = str("cd ") + dir + "\n"
f.write(line)
line = str(
"/users/knc6/anaconda2/bin/python setup.py>sout") + "\n"
f.write(line)
f.close()
with open("job.out", "w") as f:
p = subprocess.Popen(
["qsub", "submit_job"],
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
)
stdout, stderr = p.communicate()
job_id = stdout.rstrip("\n").split()[-1]
print("stdout,stderr", stdout, stderr)
# job_id = str(stdout.split('Your job')[1].split(' ')[1])
f.write(job_id)
os.chdir(cwd2) # =str(os.getcwd())
os.chdir(cwd1) # =str(os.getcwd())
except:
pass
