def test_save_nifti_parcels_map():
"""
Test save_nifti_parcels_map functionality
"""
base_dir = str(Path(__file__).parent / "examples")
ID = '002'
dir_path = base_dir + '/002/fmri'
roi = None
network = None
array_data = np.arange(24, dtype=np.int16).reshape((2, 3, 4))
affine = np.diag([1, 2, 3, 1])
net_parcels_map_nifti = nib.Nifti1Image(array_data, affine)
# Delete pre-existing parcellations dir
parc_dir = dir_path + '/parcellations'
if os.path.exists(parc_dir):
shutil.move(parc_dir, parc_dir + '_tmp')
net_parcels_nii_path = utils.save_nifti_parcels_map(
ID, dir_path, roi, network, net_parcels_map_nifti)
assert os.path.isfile(net_parcels_nii_path) is True
# Restore pre-existsing parc dir
if os.path.exists(parc_dir + '_tmp'):
shutil.rmtree(parc_dir)
shutil.move(parc_dir + '_tmp', parc_dir)
def test_save_nifti_parcels_map():
"""
Test save_nifti_parcels_map functionality
"""
base_dir = str(Path(__file__).parent/"examples")
ID = '002'
dir_path = base_dir + '/002/fmri'
roi = None
network = None
array_data = np.arange(24, dtype=np.int16).reshape((2, 3, 4))
affine = np.diag([1, 2, 3, 1])
net_parcels_map_nifti = nib.Nifti1Image(array_data, affine)
net_parcels_nii_path = utils.save_nifti_parcels_map(ID, dir_path, roi, network, net_parcels_map_nifti)
assert os.path.isfile(net_parcels_nii_path) is True
def test_save_nifti_parcels_map():
"""
Test save_nifti_parcels_map functionality
"""
import tempfile
dir_path = str(tempfile.TemporaryDirectory().name)
os.makedirs(dir_path)
ID = '002'
network = None
array_data = np.arange(24, dtype=np.int16).reshape((2, 3, 4))
affine = np.diag([1, 2, 3, 1])
net_parcels_map_nifti = nib.Nifti1Image(array_data, affine)
net_parcels_nii_path = utils.save_nifti_parcels_map(
ID, dir_path, network, net_parcels_map_nifti)
assert os.path.isfile(net_parcels_nii_path) is True
def test_save_nifti_parcels_map():
"""
Test save_nifti_parcels_map functionality
"""
tmp = tempfile.TemporaryDirectory()
dir_path = str(tmp.name)
os.makedirs(dir_path, exist_ok=True)
ID = '002'
vox_size = '2mm'
subnet = None
array_data = np.arange(24, dtype=np.int16).reshape((2, 3, 4))
affine = np.diag([1, 2, 3, 1])
net_parcels_map_nifti = nib.Nifti1Image(array_data, affine)
net_parcels_nii_path = utils.save_nifti_parcels_map(
ID, dir_path, subnet, net_parcels_map_nifti, vox_size)
assert os.path.isfile(net_parcels_nii_path) is True
tmp.cleanup()