def test_debug_option(self):
filename = os.path.dirname(os.path.realpath(__file__))
filename = tf.get_abs_path('chimera_nonoise_2events_1levels.log')
output_filename = '_test_debug_option.h5'
reader = get_reader_from_filename(filename)
data = [reader]
event_databases = find_events(data,
save_file_names=[output_filename],
debug=True)
data = reader.get_all_data()[0]
reader.close()
self.assertEqual(len(event_databases), 1)
h5file = ed.open_file(event_databases[0], mode='r')
self._test_chimera_no_noise_2events_1levels_wrapper(h5file)
# check that the file has the correct groups
groups = [x._v_name for x in h5file.walk_groups()]
self.assertIn('debug', groups, "No debug group in debug file.")
print "data:", h5file.root.debug.data[:]
np.testing.assert_array_equal(data, h5file.root.debug.data[0][:])
h5file.close()
os.remove(event_databases[0])
def test_debug_option(self):
filename = os.path.dirname(os.path.realpath(__file__))
filename = tf.get_abs_path('chimera_nonoise_2events_1levels.log')
output_filename = '_test_debug_option.h5'
reader = get_reader_from_filename(filename)
data = [reader]
event_databases = find_events(data,
save_file_names=[output_filename], debug=True)
data = reader.get_all_data()[0]
reader.close()
self.assertEqual(len(event_databases), 1)
h5file = ed.open_file(event_databases[0], mode='r')
self._test_chimera_no_noise_2events_1levels_wrapper(h5file)
# check that the file has the correct groups
groups = [x._v_name for x in h5file.walk_groups()]
self.assertIn('debug', groups, "No debug group in debug file.")
print "data:", h5file.root.debug.data[:]
np.testing.assert_array_equal(data, h5file.root.debug.data[0][:])
h5file.close()
os.remove(event_databases[0])
def test_passing_reader(self):
"""
Tests that passing an open subtype of :py:class:`pypore.i_o.abstract_reader.AbstractReader` works.
"""
filename = os.path.dirname(os.path.realpath(__file__))
filename = os.path.join(filename, "testDataFiles", "chimera_nonoise_2events_1levels.log")
reader = get_reader_from_filename(filename)
data = [reader]
event_databases = find_events(data, save_file_names=["_test_passing_reader.h5"])
self.assertEqual(len(event_databases), 1)
h5file = ed.open_file(event_databases[0], mode="r")
self._test_chimera_no_noise_2events_1levels_wrapper(h5file)
h5file.close()
os.remove(event_databases[0])
def test_passing_reader(self):
"""
Tests that passing an open subtype of :py:class:`pypore.i_o.abstract_reader.AbstractReader` works.
"""
filename = os.path.dirname(os.path.realpath(__file__))
filename = tf.get_abs_path('chimera_nonoise_2events_1levels.log')
reader = get_reader_from_filename(filename)
data = [reader]
event_databases = find_events(
data, save_file_names=['_test_passing_reader.h5'])
self.assertEqual(len(event_databases), 1)
h5file = ed.open_file(event_databases[0], mode='r')
self._test_chimera_no_noise_2events_1levels_wrapper(h5file)
h5file.close()
os.remove(event_databases[0])
