def convertCoords2PL(coordinate_files,
particleList_file,
subtomoPrefix=None,
wedgeAngles=None,
angleList=False):
pl = ParticleList()
for n, coordinate_file in enumerate(coordinate_files):
wedgeAngle = wedgeAngles[2 * n:2 * (n + 1)]
sourceInfo = pl.loadCoordinateFileHeader(coordinate_file)
l2 = len(pl)
pl.loadCoordinateFile(filename=coordinate_file,
name_prefix=subtomoPrefix[n],
wedgeAngle=wedgeAngle,
sourceInfo=sourceInfo)
try:
cc = 180. / numpy.pi
for i in range(len(pl) - l2):
z1, z2, x = random.choice(angleList)
pl[-i - 1].setRotation(rotation=Rotation(
z1=z1 * cc, z2=z2 * cc, x=x * cc, paradigm='ZXZ'))
except:
pass
pl.toXMLFile(particleList_file)
