def createOutputStep(self):
volume = Volume()
volume.setFileName(self._getExtraPath('sharpenedMap_last.mrc'))
volume.setSamplingRate(self.inputVolume.get().getSamplingRate())
volume.setOrigin(self.inputVolume.get().getOrigin(True))
volumesSet = self._createSetOfVolumes()
volumesSet.setSamplingRate(self.inputVolume.get().getSamplingRate())
for i in range(self.iteration):
vol = Volume()
vol.setLocation(
i, self._getExtraPath('sharpenedMap_%d.mrc' % (i + 1)))
vol.setObjComment("Sharpened Map, \n Epoch %d" % (i + 1))
volumesSet.append(vol)
self._defineOutputs(outputVolumes=volumesSet)
self._defineSourceRelation(self.inputVolume, volumesSet)
def createOutputStep(self):
classes2DSet = self.inputSet.get()
volumes = self._createSetOfVolumes()
shrink = self.shrink.get()
if isinstance(self.inputSet.get(), SetOfClasses2D):
volumes.setSamplingRate(
classes2DSet.getImages().getSamplingRate() * shrink)
else:
volumes.setSamplingRate(self.inputSet.get().getSamplingRate() *
shrink)
outputVols = self._getVolumes()
for k, volFn in enumerate(outputVols):
vol = Volume()
vol.setFileName(volFn)
vol.setObjComment('eman initial model %02d' % (k + 1))
volumes.append(vol)
self._defineOutputs(outputVolumes=volumes)
self._defineSourceRelation(self.inputSet, volumes)
def createOutputStep(self):
from glob import glob
classes2DSet = self.inputSet.get()
#volumes = EmanSetOfVolumes(self._getPath('scipion_volumes.json'))
volumes = self._createSetOfVolumes()
if isinstance(self.inputSet.get(), SetOfClasses2D):
volumes.setSamplingRate(classes2DSet.getImages().getSamplingRate())
else:
volumes.setSamplingRate(self.inputSet.get().getSamplingRate())
outputVols = glob(self._getExtraPath('initial_models/model_??_??.hdf'))
outputVols.sort()
for k, volFn in enumerate(outputVols):
vol = Volume()
vol.setFileName(volFn)
vol.setObjComment('eman initial model %02d' % (k+1))
volumes.append(vol)
self._defineOutputs(outputVolumes=volumes)
self._defineSourceRelation(classes2DSet, volumes)
