def _updateDataTree(self):
def createClassNode(classObj):
""" Add the object class to hierarchy and
any needed subclass. """
className = classObj.__name__
classNode = classesGraph.getNode(className)
if not classNode:
classNode = classesGraph.createNode(className)
if className != 'EMObject' and classObj.__bases__:
baseClass = classObj.__bases__[0]
for b in classObj.__bases__:
if b.__name__ == 'EMObject':
baseClass = b
break
parent = createClassNode(baseClass)
parent.addChild(classNode)
classNode.count = 0
return classNode
classesGraph = Graph()
self.dataTree.clear()
for node in self._dataGraph.getNodes():
if node.pointer:
classNode = createClassNode(node.pointer.get().getClass())
classNode.count += 1
populateTree(self.dataTree, classesGraph.getRootNodes())
def _updateDataTree(self):
def createClassNode(classObj):
""" Add the object class to hierarchy and
any needed subclass. """
className = classObj.__name__
classNode = classesGraph.getNode(className)
if not classNode:
classNode = classesGraph.createNode(className)
if className != 'EMObject' and classObj.__bases__:
baseClass = classObj.__bases__[0]
for b in classObj.__bases__:
if b.__name__ == 'EMObject':
baseClass = b
break
parent = createClassNode(baseClass)
parent.addChild(classNode)
classNode.count = 0
return classNode
classesGraph = Graph()
self.dataTree.clear()
for node in self._dataGraph.getNodes():
if node.pointer:
classNode = createClassNode(node.pointer.get().getClass())
classNode.count += 1
populateTree(self.dataTree, classesGraph.getRootNodes())
def example2():
avg = '%03d@/home/josem/Scipion/projects/analu_MCM/Runs/SpiderProtClassifyWard4236/averages.stk'
name2 = "class_%03d"
path = '%d@/home/josem/Scipion/projects/analu_MCM/Runs/XmippProtCL2D4394/extra/level_%02d/classes_sorted.stk'
name = 'level_%02d_%02d'
def getInfo(level, classNo):
return name % (level, classNo), path % (classNo, level)
def getInfo2(level, classNo):
return name2 % classNo, avg % classNo
n, p = getInfo2(0, 1)
g = Graph(rootName=n)
a = g.getRoot()
a.path = p
def addChilds(node, nodeNumber, level):
imgNo = nodeNumber * 2
for off in [0, 1]:
n, p = getInfo2(level+1, imgNo + off)
b = g.createNode(n)
b.path = p
node.addChild(b)
if level < maxLevel - 2:
addChilds(b, imgNo + off, level + 1)
addChilds(a, 1, 0)
lt = LevelTree(g)
lt.DY = 135
lt.setCanvas(canvas)
lt.paint(createNode)
def example1():
""" Display a very simple graph: A, B and C. """
g = Graph(rootName='A')
a = g.getRoot()
b = g.createNode('B')
c = g.createNode('C')
a.addChild(b, c)
lt = LevelTree(g)
lt.setCanvas(canvas)
#lt.paint(createNode, createEdge)
lt.paint()
def getGraphClassesNode(project):
from pyworkflow.utils.graph import Graph
classesGraph = Graph()
# Method to create class nodes
def createClassNode(classObj):
""" Add the object class to hierarchy and
any needed subclass. """
className = classObj.__name__
classNode = classesGraph.getNode(className)
if not classNode:
classNode = classesGraph.createNode(className)
if className != 'EMObject' and classObj.__bases__:
baseClass = classObj.__bases__[0]
for b in classObj.__bases__:
if b.__name__ == 'EMObject':
baseClass = b
break
parent = createClassNode(baseClass)
parent.addChild(classNode)
classNode.count = 0
return classNode
g = project.getSourceGraph()
for node in g.getNodes():
id = node.getName()
if id != 'PROJECT':
obj = project.mapper.selectById(id)
classNode = createClassNode(obj.getClass())
classNode.count += 1
return classesGraph
def _createDataTree(self, parent, bgColor):
"""Create a tree on the left panel to store how
many object are from each type and the hierarchy.
"""
self.style.configure("W.Treeview", background=Color.LIGHT_GREY_COLOR, borderwidth=0)
tree = Tree(parent, show='tree', style='W.Treeview')
tree.column('#0', minwidth=300)
tree.tag_configure('protocol', image=self.getImage('python_file.gif'))
tree.tag_configure('protocol_base', image=self.getImage('class_obj.gif'))
f = tkFont.Font(family='helvetica', size='10', weight='bold')
tree.tag_configure('non-empty', font=f)
tree.grid(row=0, column=0, sticky='news')
# Populate the tree
self.protTreeItems = {}
classesGraph = Graph()
def createClassNode(classObj):
""" Add the object class to hierarchy and
any needed subclass. """
className = classObj.__name__
classNode = classesGraph.getNode(className)
if not classNode:
classNode = classesGraph.createNode(className)
if className != 'EMObject' and classObj.__bases__:
baseClass = classObj.__bases__[0]
for b in classObj.__bases__:
if b.__name__ == 'EMObject':
baseClass = b
break
parent = createClassNode(baseClass)
parent.addChild(classNode)
classNode.count = 0
return classNode
for node in self._dataGraph.getNodes():
if node.object:
classNode = createClassNode(node.object.getClass())
classNode.count += 1
populateTree(tree, classesGraph.getRootNodes())
return tree
def visualizeClasses(self, e=None):
classTemplate = "class_%03d"
averages = '%03d@' + self.protocol._getFileName('averages')
def getInfo2(level, classNo):
return classTemplate % classNo, averages % classNo
node = self.protocol.buildDendrogram(writeAverages=False)
g = Graph(root=node)
self.graph = g
self.win = Window("Select classes",
self.formWindow,
minsize=(1000, 600))
root = self.win.root
canvas = Canvas(root)
canvas.grid(row=0, column=0, sticky='nsew')
root.grid_columnconfigure(0, weight=1)
root.grid_rowconfigure(0, weight=1)
self.buttonframe = tk.Frame(root)
self.buttonframe.grid(row=2, column=0, columnspan=2)
self.win.createCloseButton(self.buttonframe).grid(row=0,
column=0,
sticky='n',
padx=5,
pady=5)
saveparticlesbtn = HotButton(self.buttonframe,
"Particles",
Icon.PLUS_CIRCLE,
command=self._askCreateParticles)
saveparticlesbtn.grid(row=0, column=1, sticky='n', padx=5, pady=5)
btn = HotButton(self.buttonframe,
"Classes",
Icon.PLUS_CIRCLE,
command=self._askCreateClasses)
btn.grid(row=0, column=2, sticky='n', padx=5, pady=5)
lt = LevelTree(g)
lt.DY = 135 # TODO: change in percent of the image size
lt.setCanvas(canvas)
lt.paint(self._createNode, maxLevel=self.maxLevel.get() - 1)
canvas.updateScrollRegion()
return [self.win]