def test_pattern(self):
""" Import several Particles from a given pattern.
"""
# Check stress-ng is installed
print "Command exists?&&&&&&&&&&&&&&&&&&& %s" % commandExists(STRESS_NG)
self.assertTrue(commandExists(STRESS_NG), "This test requires to have %s installed" % STRESS_NG)
kwargs = {'noCpu': 2,
'noMem': 0,
'amountMem': 256,
'timeout':10,
'delay':1
}
#put some stress on the system
prot1 = self.newProtocol(ProtStress, **kwargs)
prot1.setObjLabel('stress')
self.proj.launchProtocol(prot1,wait=False)
#TODO fill protol pointer
kwargs = {'samplingInterval': 1,
'interval': 20
}
prot2 = self.newProtocol(ProtMonitorSystem, **kwargs)
prot2.inputProtocols.append(prot1)
self.launchProtocol(prot2)
baseFn = prot2._getPath(SYSTEM_LOG_SQLITE)
import os.path
#not sure what to test here
print baseFn
self.assertTrue(os.path.isfile(baseFn))
def validateInstallation():
""" This function will be used to check if ATSAS is properly installed. """
missingPaths = []
if not (commandExists(CRYSOL)):
missingPaths.append("%s not found in the system" % CRYSOL)
if missingPaths:
return ["Missing variables:"] + missingPaths
else:
return [] # No errors
def validateInstallation():
""" This function will be used to check if ATSAS is properly installed. """
missingPaths = []
if not (commandExists(CRYSOL)):
missingPaths.append("%s not found in the system" % CRYSOL)
if missingPaths:
return ["Missing variables:"] + missingPaths
else:
return [] # No errors
def validateInstallation(cls):
""" This function will be used to check if PDFto latex is available. """
missingPaths = []
from pyworkflow.utils import commandExists
if not (commandExists(PDFLATEX)):
missingPaths.append("%s not found in the system" % PDFLATEX)
if missingPaths:
return ["Missing variables:"] + missingPaths
else:
return [] # No errors
def validateInstallation():
""" This function will be used to check if RELION is properly installed. """
missingPaths = []
if not (os.path.exists(os.environ.get(ETHAN_HOME))
or commandExists(ETHAN)):
missingPaths.append("%s or %s: %s" % (ETHAN_HOME, ETHAN,
"Ethan not found in the system"))
if missingPaths:
return ["Missing variables:"] + missingPaths
else:
return [] # No errors
def validateInstallation():
""" This function will be used to check if RELION is properly installed. """
missingPaths = []
if not (os.path.exists(os.environ.get(ETHAN_HOME))
or commandExists(ETHAN)):
missingPaths.append(
"%s or %s: %s" %
(ETHAN_HOME, ETHAN, "Ethan not found in the system"))
if missingPaths:
return ["Missing variables:"] + missingPaths
else:
return [] # No errors
def test_pattern(self):
""" Import several Particles from a given pattern.
"""
# Check stress-ng is installed
self.assertTrue(
pwutils.commandExists(emprot.STRESS_NG),
"This test requires to have %s installed" % emprot.STRESS_NG)
kwargs = {
'noCpu': 2,
'noMem': 0,
'amountMem': 256,
'timeout': 10,
'delay': 1
}
# put some stress on the system
prot1 = self.newProtocol(emprot.ProtStress, **kwargs)
prot1.setObjLabel('stress')
self.proj.launchProtocol(prot1, wait=False)
# TODO fill protol pointer
kwargs = {
"samplingInterval": 2,
"cpuAlert": 101.0,
"memAlert": 101.0,
"swapAlert": 101.0,
"monitorTime": 300.0,
"doMail": True,
"emailFrom": "*****@*****.**",
"emailTo": "*****@*****.**",
"smtp": "smtp.fakeadress.com",
"doGpu": False,
"gpusToUse": "0",
"doNetwork": True,
"netInterfaces": 1,
"doDiskIO": True
}
prot2 = self.newProtocol(monitorsProt.ProtMonitorSystem, **kwargs)
prot2.inputProtocols.append(prot1)
self.launchProtocol(prot2)
baseFn = prot2._getPath(monitorsProt.SYSTEM_LOG_SQLITE)
# not sure what to test here
self.assertTrue(os.path.isfile(baseFn))
def test_pattern(self):
""" Import several Particles from a given pattern.
"""
# Check stress-ng is installed
self.assertTrue(commandExists(STRESS_NG),
"This test requires to have %s installed" % STRESS_NG)
kwargs = {'noCpu': 2,
'noMem': 0,
'amountMem': 256,
'timeout': 10,
'delay': 1}
# put some stress on the system
prot1 = self.newProtocol(ProtStress, **kwargs)
prot1.setObjLabel('stress')
self.proj.launchProtocol(prot1, wait=False)
# TODO fill protol pointer
kwargs = {
"samplingInterval": 2,
"cpuAlert": 101.0,
"memAlert": 101.0,
"swapAlert": 101.0,
"monitorTime": 300.0,
"doMail": True,
"emailFrom": "*****@*****.**",
"emailTo": "*****@*****.**",
"smtp": "smtp.fakeadress.com",
"doGpu": False,
"gpusToUse": "0",
"doNetwork": True,
"netInterfaces": 1,
"doDiskIO": True}
prot2 = self.newProtocol(ProtMonitorSystem, **kwargs)
prot2.inputProtocols.append(prot1)
self.launchProtocol(prot2)
baseFn = prot2._getPath(SYSTEM_LOG_SQLITE)
# not sure what to test here
self.assertTrue(os.path.isfile(baseFn))