def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
if os.path.isdir(opts.input_path):
multiple_file_manifold(opts.input_path, opts.output_path, opts.algorithm)
elif os.path.isfile(opts.input_path):
manifold_res_string = compute_manifold(opts.input_path,opts.algorithm)
f = open(opts.output_path, 'w')
f.write(manifold_res_string)
f.close()
else:
print("io error, check input file path")
exit(1)
def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
if os.path.isdir(opts.input_path):
multiple_file_manifold(opts.input_path, opts.output_path,
opts.algorithm)
elif os.path.isfile(opts.input_path):
manifold_res_string = compute_manifold(opts.input_path, opts.algorithm)
f = open(opts.output_path, 'w')
f.write(manifold_res_string)
f.close()
else:
print("io error, check input file path")
exit(1)
def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
#Individual parameters are separated by commas
params_list = opts.params.split(",")
params = dict()
for pair in params_list:
#The value is separated from the parameter by an equals sign
key_value = pair.split("=")
params[key_value[0]] = key_value[1]
if os.path.isdir(opts.input_path):
multiple_file_manifold(opts.input_path, opts.output_path, opts.algorithm, params)
elif os.path.isfile(opts.input_path):
manifold_res_string = compute_manifold(opts.input_path, opts.algorithm, params)
f = open(opts.output_path, 'w')
f.write(manifold_res_string)
f.close()
else:
print("io error, check input file path")
exit(1)
def test_manifold(self):
'''Manifold calculation should throw no errors'''
result = compute_manifold([self.biomstr],"isomap")
assert result
def test_manifold(self):
'''Manifold calculation should throw no errors'''
result = compute_manifold([self.biomstr], "isomap")
assert result