Exemplos de check_sfffile em Python

Exemplo n.º 1

Arquivo: make_per_library_sff.py Projeto: Jorge-C/qiime

def make_per_library_sff_with_sfffile(
    sff_fps, id_list_fp, sfffile_path=None, debug=False):
    id_list_basepath, _ = os.path.splitext(id_list_fp)
    output_fp = id_list_basepath + '.sff'

    check_sfffile()
    args = ['sfffile', '-i', id_list_fp, '-o', output_fp] + sff_fps
    if debug:
        print args
    subprocess.check_call(
        args, stdout=open(os.devnull, 'w'), stderr=open(os.devnull, 'w'))

Exemplo n.º 2

Arquivo: make_per_library_sff.py Projeto: jb2263/qiime

def make_per_library_sff_with_sfffile(
    sff_fps, id_list_fp, sfffile_path=None, debug=False):
    id_list_basepath, _ = os.path.splitext(id_list_fp)
    output_fp = id_list_basepath + '.sff'

    check_sfffile()
    args = ['sfffile', '-i', id_list_fp, '-o', output_fp] + sff_fps
    if debug:
        print args
    subprocess.check_call(
        args, stdout=open(os.devnull, 'w'), stderr=open(os.devnull, 'w'))