def test_peek_artifact_as_visualization(self):
artifact = Artifact._from_view(FourInts, [0, 0, 42, 1000], list,
self.provenance)
fp = os.path.join(self.test_dir.name, 'artifact.qza')
artifact.save(fp)
with self.assertRaisesRegex(
TypeError, 'Visualization does not support.*FourInts'):
Visualization.peek(fp)
def inspect_visualization(uuid):
try:
metadata = Visualization.peek(VISUALIZATIONS[uuid])
except Exception:
abort(404)
return jsonify({'uuid': metadata.uuid, 'type': metadata.type})
def inspect_visualization(uuid):
try:
metadata = Visualization.peek(VISUALIZATIONS[uuid])
except Exception:
abort(404)
return jsonify({'uuid': metadata.uuid, 'type': metadata.type})
def test_peek(self):
visualization = Visualization._from_data_dir(self.data_dir, None)
fp = os.path.join(self.test_dir.name, 'visualization.qza')
visualization.save(fp)
metadata = Visualization.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, qiime.core.type.Visualization)
self.assertIsNone(metadata.provenance)
self.assertEqual(metadata.uuid, visualization.uuid)
def test_peek(self):
visualization = Visualization._from_data_dir(self.data_dir)
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization.save(fp)
metadata = Visualization.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, 'Visualization')
self.assertEqual(metadata.uuid, str(visualization.uuid))
self.assertIsNone(metadata.format)
def test_peek(self):
visualization = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization.save(fp)
metadata = Visualization.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, 'Visualization')
self.assertEqual(metadata.uuid, str(visualization.uuid))
self.assertIsNone(metadata.format)
def get_visualizations():
global VISUALIZATIONS
VISUALIZATIONS = {}
path = os.getcwd()
viz_paths = list(glob.glob(os.path.join(path, '*.qzv')))
visualizations = []
for viz_path in viz_paths:
try:
metadata = Visualization.peek(viz_path)
name, _ = os.path.splitext(os.path.basename(viz_path))
VISUALIZATIONS[str(metadata.uuid)] = viz_path
visualizations.append(
_result_record(metadata, name, '.inspect_visualization'))
except Exception:
pass # TODO: do better things when this happens
return jsonify({'visualizations': visualizations})
def get_visualizations():
global VISUALIZATIONS
VISUALIZATIONS = {}
path = os.getcwd()
viz_paths = list(glob.glob(os.path.join(path, '*.qzv')))
visualizations = []
for viz_path in viz_paths:
try:
metadata = Visualization.peek(viz_path)
name, _ = os.path.splitext(os.path.basename(viz_path))
VISUALIZATIONS[metadata.uuid] = viz_path
visualizations.append(
_result_record(metadata, name, '.inspect_visualization'))
except Exception:
pass # TODO: do better things when this happens
return jsonify({'visualizations': visualizations})
