def test_remap_job():
job = TEMPLATE_JOB
tool = from_url(join(dirname(__file__), 'bwa-mem.json#tool'))
context = init_context()
fix_types(tool)
app = context.from_dict(tool)
input_file = from_url(join(dirname(__file__), 'inputs.json'))
startdir = './'
def test_workflow():
path = abspath(join(__file__, '../../test_runtime/wf_tests.yaml'))
context = init_context()
doc = from_url(path)
tests = doc['tests']
for test_name, test in six.iteritems(tests):
features = test.get('requiresFeatures', [])
if 'map' not in features:
fix_types(test['job']['app'])
yield assert_execution, context.from_dict(test['job']), test['outputs']
