def test_produce_experiments_without_anotation(self):
"""
Test producing experiments with missing annotation
"""
data = {'experiments':[{'project_id': 'ProjectABC',
'accession_id': '123'
}
],
'accessions':[{'project_id': 'ProjectABC',
'accession_id': '123',
'partition': 'partition',
'lab':'lab',
'species':'species',
'cell':'cell',
'localization':'localization',
'rnaExtract':'rnaExtract',
'readType':'readType'
}
],
'annotations':[],
'read_length':[{'project_id': 'ProjectABC',
'accession_id': '123',
'read_length':'76'
}
],
'replicates':[{'replicate_id': '123',
'project_id': 'ProjectABC',
'accession_id': '123',
'ANNOTATION': '/tmp/anno'
}]
}
database = SANDBOX
project_parameters = {}
self.failUnless(produce_experiments(data, database, project_parameters) == None)
def test_produce_experiments_empty(self):
"""
Test producing experiments
"""
data = {'experiments':[],'accessions':[], 'annotations':[],'read_length':[],
'replicates':[]}
database = SANDBOX
project_parameters = None
self.failUnless(produce_experiments(data, database, project_parameters) == None)
