def test_research_id_to_redcap_id_converter(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
class MockRedcapClient(RedcapClient):
def __init__(self, context):
self.__context = context
def send_data_to_redcap(self, data, overwrite=False):
raise NotImplementedError()
def get_data_from_redcap(self,
records_to_fetch=None,
events_to_fetch=None,
fields_to_fetch=None,
forms_to_fetch=None,
return_format='xml'):
return self.__context.dummy_get_data_from_redcap(
records_to_fetch, events_to_fetch, fields_to_fetch,
forms_to_fetch, return_format)
redi.research_id_to_redcap_id_converter(self.data,
MockRedcapClient(self),
self.research_id_to_redcap_id,
self.configuration_directory)
result = etree.tostring(self.data)
self.assertEqual(self.expect, result)
def test_create_empty_event_tree_for_study_for_zero_subjects(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.zero_subjects = """<?xml version='1.0' encoding='US-ASCII'?>
<study></study>
"""
self.data_zero_subjects = etree.ElementTree(etree.fromstring(self.zero_subjects))
self.assertRaises(Exception,redi.create_empty_event_tree_for_study,self.data_zero_subjects,self.data_all_form_events)
def test_empty_event(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
logging.info("Running " + __name__
+ "#test_empty_event() using study_id: " + `self.CONST_STUDY_ID`)
# Case 1 input string
string_1_empty_event = """
<event>
</event>
"""
out_dict_1 = {'study_id':self.CONST_STUDY_ID}
etree_1 = etree.ElementTree(etree.fromstring(string_1_empty_event))
self.assertRaises(Exception, upload.create_import_data_json, out_dict_1, etree_1)
def test_create_empty_event_tree_for_study_for_one_subjects(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.one_subject = """<?xml version='1.0' encoding='US-ASCII'?>
<study>
<subject lab_id="999-123">
<NAME>TestSubject</NAME>
<loinc_code>123456</loinc_code>
<RESULT>123</RESULT>
<REFERENCE_LOW>12.3</REFERENCE_LOW>
<REFERENCE_HIGH>12.3</REFERENCE_HIGH>
<REFERENCE_UNIT>g/dL</REFERENCE_UNIT>
<DATE_TIME_STAMP/>
<STUDY_ID>123</STUDY_ID>
<timestamp/><redcapFormName>cbc</redcapFormName><eventName/><formDateField>cbc_lbdtc</formDateField><formCompletedFieldName>cbc_complete</formCompletedFieldName><formImportedFieldName>cbc_nximport</formImportedFieldName><redcapFieldNameValue>hemo_lborres</redcapFieldNameValue><redcapFieldNameUnits>hemo_lborresu</redcapFieldNameUnits><redcapFieldNameStatus>hemo_lbstat</redcapFieldNameStatus></subject>
</study>
"""
self.data_one_subject= etree.ElementTree(etree.fromstring(self.one_subject))
self.output_one_subject = """
<person_form_event>
<person lab_id="999-123">
<study_id>123</study_id>
<all_form_events>
<form>
<name>cbc</name>
<event>
<name>1_arm_1</name>
<field><name>lymce_lborres</name><value/></field><field><name>lymce_lborresu</name><value/></field><field><name>hemo_lborresu</name><value/></field><field><name>cbc_lbdtc</name><value/></field><field><name>cbc_nximport</name><value/></field><field><name>lymce_lbstat</name><value/></field><field><name>cbc_complete</name><value/></field><field><name>hemo_lbstat</name><value/></field><field><name>hemo_lborres</name><value/></field>
</event>
</form>
<form>
<name>chemistry</name>
<event>
<name>1_arm_1</name>
<field><name>k_lborres</name><value/></field><field><name>chem_lbdtc</name><value/></field><field><name>sodium_lborresu</name><value/></field><field><name>k_lbstat</name><value/></field><field><name>sodium_lbstat</name><value/></field><field><name>chem_nximport</name><value/></field><field><name>chemistry_complete</name><value/></field><field><name>k_lborresu</name><value/></field><field><name>sodium_lborres</name><value/></field>
</event>
</form>
<form>
<name>inr</name>
<event>
<name>1_arm_1</name>
<field><name>inr_lbdtc</name><value/></field><field><name>inr_complete</name><value/></field><field><name>inr_nximport</name><value/></field></event>
</form>
</all_form_events>
</person>
</person_form_event>
"""
self.expect_one_subject = etree.tostring(etree.fromstring(self.output_one_subject))
self.result = etree.tostring(
redi.create_empty_event_tree_for_study(self.data_one_subject,self.data_all_form_events))
clean_expected = ''.join(self.expect_one_subject.split())
clean_result = ''.join(self.result.split())
self.assertEqual(clean_expected, clean_result)
def test_update_formdatefield(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
redi.update_formdatefield(self.data, self.form_events_tree)
# output raw file to check it
#redi.write_element_tree_to_file(self.data, 'rawData.xml')
# initialize a dictionary for the formdatefield
# [key, value] = [formdatefield, filled or not?(0/1)]
isFormDateFieldFilled = {}
for subject in self.data.iter('subject'):
form_date_field = subject.find('formDateField').text
if not form_date_field:
isFormDateFieldFilled[form_date_field] = 1
status = 1
for key, value in isFormDateFieldFilled.items():
if value != status:
status = 0
break
self.assertEqual(status, 1)
def test_update_formdatefield(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
redi.update_formdatefield(self.data, self.form_events_tree)
# output raw file to check it
#redi.write_element_tree_to_file(self.data, 'rawData.xml')
# initialize a dictionary for the formdatefield
# [key, value] = [formdatefield, filled or not?(0/1)]
isFormDateFieldFilled = {}
for subject in self.data.iter('subject'):
form_date_field = subject.find('formDateField').text
if not form_date_field:
isFormDateFieldFilled[form_date_field] = 1
status=1
for key,value in isFormDateFieldFilled.items():
if value != status:
status = 0
break
self.assertEqual(status,1)
def test_log(self):
import os.path
file_name = self.file_name
sys.path.append('log')
# remove any existing log file in log/ folder
#if os.path.isfile(file_name):
# with open(file_name):
#print "here"
# os.remove(file_name)
#print os.path.isfile(file_name)
# call the configure logging function
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
#print 'checking if log file was created: ' + file_name
# check if the file is created
assert os.path.isfile(file_name) == True
# remove the file created through testing
os.remove(file_name)
def test_log(self):
import os.path
file_name = self.file_name
sys.path.append('log')
# remove any existing log file in log/ folder
#if os.path.isfile(file_name):
# with open(file_name):
#print "here"
# os.remove(file_name)
#print os.path.isfile(file_name)
# call the configure logging function
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
#print 'checking if log file was created: ' + file_name
# check if the file is created
assert os.path.isfile(file_name) == True
# remove the file created through testing
os.remove(file_name)
def setUp(self):
# initialize the data with element tree
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.test_xml = """<?xml version="1.0" encoding="utf8"?>
<study>
<subject>
<NAME>TSH REFLEX</NAME>
<loinc_code>1552152</loinc_code>
<RESULT>0.74</RESULT>
<REFERENCE_LOW>0.27</REFERENCE_LOW>
<REFERENCE_HIGH>4.20</REFERENCE_HIGH>
<REFERENCE_UNIT>mIU/L</REFERENCE_UNIT>
<DATE_TIME_STAMP>1903-11-27 15:13:00</DATE_TIME_STAMP>
<STUDY_ID>59</STUDY_ID>
</subject>
<subject>
<NAME>HEP C RNA, QUANT REAL-TIME</NAME>
<loinc_code>740</loinc_code>
<RESULT>5.8</RESULT>
<REFERENCE_LOW></REFERENCE_LOW>
<REFERENCE_HIGH></REFERENCE_HIGH>
<REFERENCE_UNIT>log IU</REFERENCE_UNIT>
<DATE_TIME_STAMP>1903-11-27 15:13:00</DATE_TIME_STAMP>
<STUDY_ID>59</STUDY_ID>
</subject>
<subject>
<NAME>HCV QUANTITATIVE INTERPRETATION</NAME>
<loinc_code>1534483</loinc_code>
<RESULT>Detected</RESULT>
<REFERENCE_LOW></REFERENCE_LOW>
<REFERENCE_HIGH></REFERENCE_HIGH>
<REFERENCE_UNIT></REFERENCE_UNIT>
<DATE_TIME_STAMP>1903-11-27 15:13:00</DATE_TIME_STAMP>
<STUDY_ID>59</STUDY_ID>
</subject>
</study>"""
self.data = etree.ElementTree(etree.fromstring(self.test_xml))
self.input_date_format = "%Y-%m-%d %H:%M:%S"
self.output_date_format = "%Y-%m-%d"
def setUp(self):
# initialize the data with element tree
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.test_xml = """<?xml version="1.0" encoding="utf8"?>
<study>
<subject>
<NAME>TSH REFLEX</NAME>
<loinc_code>1552152</loinc_code>
<RESULT>0.74</RESULT>
<REFERENCE_LOW>0.27</REFERENCE_LOW>
<REFERENCE_HIGH>4.20</REFERENCE_HIGH>
<REFERENCE_UNIT>mIU/L</REFERENCE_UNIT>
<DATE_TIME_STAMP>1903-11-27 15:13:00</DATE_TIME_STAMP>
<STUDY_ID>59</STUDY_ID>
</subject>
<subject>
<NAME>HEP C RNA, QUANT REAL-TIME</NAME>
<loinc_code>740</loinc_code>
<RESULT>5.8</RESULT>
<REFERENCE_LOW></REFERENCE_LOW>
<REFERENCE_HIGH></REFERENCE_HIGH>
<REFERENCE_UNIT>log IU</REFERENCE_UNIT>
<DATE_TIME_STAMP>1903-11-27 15:13:00</DATE_TIME_STAMP>
<STUDY_ID>59</STUDY_ID>
</subject>
<subject>
<NAME>HCV QUANTITATIVE INTERPRETATION</NAME>
<loinc_code>1534483</loinc_code>
<RESULT>Detected</RESULT>
<REFERENCE_LOW></REFERENCE_LOW>
<REFERENCE_HIGH></REFERENCE_HIGH>
<REFERENCE_UNIT></REFERENCE_UNIT>
<DATE_TIME_STAMP>1903-11-27 15:13:00</DATE_TIME_STAMP>
<STUDY_ID>59</STUDY_ID>
</subject>
</study>"""
self.data = etree.ElementTree(etree.fromstring(self.test_xml))
self.input_date_format = "%Y-%m-%d %H:%M:%S"
self.output_date_format = "%Y-%m-%d"
def test_research_id_to_redcap_id_converter(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
class MockRedcapClient(RedcapClient):
def __init__(self, context):
self.__context = context
def send_data_to_redcap(self, data, overwrite=False):
raise NotImplementedError()
def get_data_from_redcap(self, records_to_fetch=None,
events_to_fetch=None, fields_to_fetch=None,
forms_to_fetch=None, return_format='xml'):
return self.__context.dummy_get_data_from_redcap(
records_to_fetch, events_to_fetch, fields_to_fetch,
forms_to_fetch, return_format)
redi.research_id_to_redcap_id_converter(self.data,
MockRedcapClient(self),
self.research_id_to_redcap_id,
self.configuration_directory)
result = etree.tostring(self.data)
self.assertEqual(self.expect, result)
def setUp(self):
redi.configure_logging('.')
#redi.logger.setLevel(logging.DEBUG)
# un-sorted XML file
self.unsorted = """<?xml version="1.0" encoding="UTF-8"?>
<study>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE></ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-03 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE>123</ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-01 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE> </ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-02 00:00:00</DATE_TIME_STAMP>
</subject>
</study>
"""
# we expect the following sorted tree
self.sorted_tree = """<?xml version="1.0" encoding="UTF-8"?>
<study>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE>123</ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-01 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE> </ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-02 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE></ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-03 00:00:00</DATE_TIME_STAMP>
</subject>
</study>
"""
self.dirpath = tempfile.mkdtemp()
def setUp(self):
redi.configure_logging('.')
#redi.logger.setLevel(logging.DEBUG)
# un-sorted XML file
self.unsorted = """<?xml version="1.0" encoding="UTF-8"?>
<study>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE></ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-03 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE>123</ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-01 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE> </ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-02 00:00:00</DATE_TIME_STAMP>
</subject>
</study>
"""
# we expect the following sorted tree
self.sorted_tree = """<?xml version="1.0" encoding="UTF-8"?>
<study>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE>123</ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-01 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE> </ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-02 00:00:00</DATE_TIME_STAMP>
</subject>
<subject>
<NAME>PLATELET COUNT</NAME>
<ORD_VALUE></ORD_VALUE>
<STUDY_ID>999-0262</STUDY_ID>
<redcapFormName>cbc</redcapFormName>
<loinc_code>component_A</loinc_code>
<DATE_TIME_STAMP>2013-12-03 00:00:00</DATE_TIME_STAMP>
</subject>
</study>
"""
self.dirpath = tempfile.mkdtemp()
def test_create_empty_events_for_one_subject_all_fields_input(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.result = etree.tostring(redi.create_empty_events_for_one_subject(self.data1_test1,self.data2_test1))
self.result = ''.join(self.result.split())
self.expect_test1 = ''.join(self.expect_test1.split())
self.assertEqual(self.expect_test1, self.result)
def test_create_empty_events_for_one_subject_no_fields_input(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.assertRaises(Exception,redi.create_empty_events_for_one_subject,self.data1_test2,self.data2_test2)
def setUp(self):
# configure logging
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
# start a server in seperate thread
thread.start_new_thread(self.server_setup,())
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.sampleData = """<rediFieldMap>
def test_update_form_imported(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
redi.update_form_imported_field(self.data, self.form_events_tree, 'undefined')
result = etree.tostring(self.data)
self.assertEqual(self.expect, result)
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.study_id = 123
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.CONST_STUDY_ID = 73
return()
def test_update_event_name(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
redi.update_event_name(self.data, self.form_events_tree, 'undefined')
result = etree.tostring(self.data)
self.assertEqual(self.expect, result)
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.study_id = 123
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.test_raw_xml = """<?xml version='1.0' encoding='US-ASCII'?>
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.sampleData = """<study>
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.test_raw_xml = """<?xml version='1.0' encoding='US-ASCII'?>
def setUp(self):
"""
Prepare data structures
"""
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
self.test_report_params = {
'project': 'hcvtarget-uf',
'report_file_path': os.path.join(DEFAULT_DATA_DIRECTORY, 'unittest_report.xml'),
'redcap_uri': 'https://hostname.org',
'is_sort_by_lab_id': True,
}
self.test_report_data = {
'total_subjects': 5,
'form_details': {
'Total_chemistry_Forms': 22,
'Total_cbc_Forms': 53
},
'subject_details': {
'60': {'cbc_Forms': 1, 'chemistry_Forms': 1, 'lab_id': '999-0060'},
'61': {'cbc_Forms': 2, 'chemistry_Forms': 1, 'lab_id': '999-0061'},
'63': {'cbc_Forms': 11, 'chemistry_Forms': 4, 'lab_id': '999-0063'},
'59': {'cbc_Forms': 39, 'chemistry_Forms': 16, 'lab_id': '999-0059'}
},
'errors' : [],
}
self.test_alert_summary = {
'multiple_values_alert': [
'This is multiple values alert 1',
'This is multiple values alert 2',
'This is multiple values alert 3'],
'max_event_alert': [
'This is max event alert 1',
'This is max event alert 2',
'This is max event alert 3']
}
self.specimen_taken_time_summary = {'total': 15, 'blank': 3}
self.duration_dict = {
'all' : {
'start': "2014-01-01 00:00:00",
'end': "2014-01-01 00:00:01",
}
}
self.expected_xml = '''
<report>
<header>
<project>hcvtarget-uf</project>
<date>'''+time.strftime("%m/%d/%Y")+'''</date>
<redcapServerAddress>https://hostname.org</redcapServerAddress>
</header>
<summary>
<subjectCount>5</subjectCount>
<forms>
<form>
<form_name>Total_cbc_Forms</form_name>
<form_count>53</form_count>
</form>
<form>
<form_name>Total_chemistry_Forms</form_name>
<form_count>22</form_count>
</form>
</forms>
</summary>
<alerts>
<tooManyForms>
<eventAlert>
<message>This is max event alert 1</message>
</eventAlert>
<eventAlert>
<message>This is max event alert 2</message>
</eventAlert>
<eventAlert>
<message>This is max event alert 3</message>
</eventAlert>
</tooManyForms>
<tooManyValues>
<valuesAlert>
<message>This is multiple values alert 1</message>
</valuesAlert>
<valuesAlert>
<message>This is multiple values alert 2</message>
</valuesAlert>
<valuesAlert><message>This is multiple values alert 3</message>
</valuesAlert></tooManyValues>
</alerts>
<subjectsDetails>
<subject>
<redcap_id>59</redcap_id>
<forms>
<form>
<form_name>cbc_Forms</form_name>
<form_count>39</form_count>
</form>
<form>
<form_name>chemistry_Forms</form_name>
<form_count>16</form_count>
</form>
</forms>
<lab_id>999-0059</lab_id>
</subject>
<subject>
<redcap_id>60</redcap_id>
<forms>
<form>
<form_name>cbc_Forms</form_name>
<form_count>1</form_count></form>
<form>
<form_name>chemistry_Forms</form_name>
<form_count>1</form_count>
</form>
</forms>
<lab_id>999-0060</lab_id>
</subject>
<subject>
<redcap_id>61</redcap_id>
<forms>
<form>
<form_name>cbc_Forms</form_name>
<form_count>2</form_count>
</form>
<form>
<form_name>chemistry_Forms</form_name>
<form_count>1</form_count>
</form>
</forms>
<lab_id>999-0061</lab_id>
</subject>
<subject>
<redcap_id>63</redcap_id>
<forms>
<form>
<form_name>cbc_Forms</form_name>
<form_count>11</form_count>
</form>
<form>
<form_name>chemistry_Forms</form_name>
<form_count>4</form_count>
</form>
</forms>
<lab_id>999-0063</lab_id>
</subject>
</subjectsDetails>
<errors/>
<summaryOfSpecimenTakenTimes>
<total>15</total>
<blank>3</blank>
<percent>20.0</percent>
</summaryOfSpecimenTakenTimes>
<sort_details_by>lab_id</sort_details_by>
<time_all_start>00:00:00</time_all_start>
<time_all_end>00:00:01</time_all_end>
<time_all_diff>0:00:01</time_all_diff>
</report>'''
self.schema_str = StringIO('''\
<xs:schema attributeFormDefault="unqualified" elementFormDefault="qualified" xmlns:xs="http://www.w3.org/2001/XMLSchema">
<xs:element name="report">
<xs:complexType>
<xs:sequence>
<xs:element name="header">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:string" name="project"/>
<xs:element type="xs:string" name="date"/>
<xs:element type="xs:string" name="redcapServerAddress"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="summary">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:byte" name="subjectCount"/>
<xs:element name="forms">
<xs:complexType>
<xs:sequence>
<xs:element name="form" maxOccurs="unbounded" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:string" name="form_name"/>
<xs:element type="xs:byte" name="form_count"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="alerts">
<xs:complexType>
<xs:sequence>
<xs:element name="tooManyForms">
<xs:complexType>
<xs:sequence>
<xs:element name="eventAlert" maxOccurs="unbounded" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:string" name="message"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="tooManyValues">
<xs:complexType>
<xs:sequence>
<xs:element name="valuesAlert" maxOccurs="unbounded" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:string" name="message"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="subjectsDetails">
<xs:complexType>
<xs:sequence>
<xs:element name="subject" maxOccurs="unbounded" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:int" name="redcap_id"/>
<xs:element name="forms">
<xs:complexType>
<xs:sequence>
<xs:element name="form" maxOccurs="unbounded" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:string" name="form_name"/>
<xs:element type="xs:byte" name="form_count"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element type="xs:string" name="lab_id"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="errors">
</xs:element>
<xs:element name="summaryOfSpecimenTakenTimes">
<xs:complexType>
<xs:sequence>
<xs:element type="xs:byte" name="total"/>
<xs:element type="xs:byte" name="blank"/>
<xs:element type="xs:float" name="percent"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="sort_details_by"></xs:element>
<xs:element name="time_all_start"></xs:element>
<xs:element name="time_all_end"></xs:element>
<xs:element name="time_all_diff"></xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:schema>''')
return
def setUp(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
def test_update_event_name_keep_all_events(self):
redi.configure_logging(DEFAULT_DATA_DIRECTORY)
redi.update_event_name(self.data, self.form_events_tree, 'undefined')
result = etree.tostring(self.data)
self.assertEqual(self.expect, result)