def report_run(run_id):
lanes = sorted(set(e['lane_number'] for e in rest_api().get_documents('lanes', where={'run_id': run_id})))
return render_template(
'run_report.html',
run_id + ' Run Report',
include_review_modal=True,
lane_aggregation=util.datatable_cfg(
'Aggregation per lane',
'lane_aggregation',
api_url=util.construct_url('lanes', where={'run_id': run_id}),
default_sort_col='lane_number',
minimal=True,
create_row='color_filter',
review={'entity_field': 'aggregated.sample_ids', 'button_name': 'runreview'}
),
tab_sets=[
util.tab_set_cfg(
'Demultiplexing reports per lane',
[
util.datatable_cfg(
'Demultiplexing lane ' + str(lane),
'demultiplexing',
api_url=util.construct_url('run_elements', where={'run_id': run_id, 'lane': lane}),
minimal=True,
create_row='color_filter',
review={'entity_field': 'sample_id', 'button_name': 'runreview'}
)
for lane in lanes
]
),
util.tab_set_cfg(
'Unexpected barcodes',
[
util.datatable_cfg(
'Unexpected barcodes lane ' + str(lane),
'unexpected_barcodes',
api_url=util.construct_url('unexpected_barcodes', where={'run_id': run_id, 'lane': lane}),
default_sort_col='passing_filter_reads',
minimal=True,
create_row='color_filter'
)
for lane in lanes
]
)
],
procs=rest_api().get_documents(
'analysis_driver_procs',
where={'dataset_type': 'run', 'dataset_name': run_id},
embedded={'stages': 1},
sort='-_created'
)
)
def test_tab_set_cfg(self):
with patch('auth.request', new=FakeRequest):
dt_cfg = util.datatable_cfg('Test', 'demultiplexing', cfg['rest_api'])
obs = util.tab_set_cfg('A Tab Set', [dt_cfg])
exp = {
'title': 'A Tab Set',
'name': 'a_tab_set',
'tables': [dt_cfg]
}
assert obs == exp
