def test_orc_plain_failure(tmpdir, job_spec, shell):
job_spec["_resolved_command_str"] = "iwillfail"
job_spec["inputs"] = []
local_dir = str(tmpdir)
with chpwd(local_dir):
orc = orcs.PlainOrchestrator(shell, submission_type="local",
job_spec=job_spec)
orc.prepare_remote()
orc.submit()
orc.follow()
for fname in "status", "stderr", "stdout":
assert op.exists(op.join(orc.meta_directory, fname + ".0"))
def fn(resource, jspec):
create_tree(local_dir, {"d": {"in": "content\n"}})
with chpwd(local_dir):
orc = orcs.PlainOrchestrator(resource, submission_type="local",
job_spec=jspec)
orc.prepare_remote()
assert orc.session.exists(
op.join(orc.working_directory, "d", "in"))
orc.submit()
orc.follow()
assert orc.session.exists(op.join(orc.working_directory, "out"))
orc.fetch()
assert open("out").read() == "content\nmore\n"
def fn(resource, jspec):
create_tree(local_dir, {"d": {"in": "content\n"}})
with chpwd(local_dir):
orc = orcs.PlainOrchestrator(resource,
submission_type="local",
job_spec=jspec)
orc.prepare_remote()
assert orc.session.exists(op.join(orc.working_directory, "d",
"in"))
orc.submit()
orc.follow()
assert orc.session.exists(op.join(orc.working_directory, "out"))
orc.fetch()
assert open("out").read() == "content\nmore\n"
metadir_local = op.relpath(orc.meta_directory,
orc.working_directory)
for fname in "status", "stderr", "stdout":
assert op.exists(op.join(metadir_local, fname + ".0"))
def test_orc_root_directory_error(shell, value):
orc = orcs.PlainOrchestrator(shell, submission_type="local")
with patch.object(orc.session, "query_envvars", return_value=value):
with pytest.raises(OrchestratorError):
orc.root_directory
def test_orc_root_directory(shell):
orc = orcs.PlainOrchestrator(shell, submission_type="local")
assert orc.root_directory == op.expanduser("~/.reproman/run-root")
def test_orc_resurrection_invalid_job_spec(check_orc_plain, shell):
with pytest.raises(OrchestratorError):
orcs.PlainOrchestrator(shell,
submission_type="local",
job_spec={},
resurrection=True)