def __init__(self, dt=0.01, fn=None):
self.dt = dt
self.models = OrderedDict()
self.states = OrderedDict()
self.spikes = OrderedDict()
self.fn = fn
self.writer = SimWriter()
def __init__(self, dt=0.01, fn=None):
self.dt = dt
self.models = OrderedDict()
self.states = OrderedDict()
self.spikes = OrderedDict()
self.fn = fn
self.writer = SimWriter()
class Simulation(object):
def __init__(self, dt=0.01, fn=None):
self.dt = dt
self.models = OrderedDict()
self.states = OrderedDict()
self.spikes = OrderedDict()
self.fn = fn
self.writer = SimWriter()
def addModel(self, model):
self.models[model.name] = model
self.states[model.name] = []
self.spikes[model.name] = []
def integrate(self, t):
for name, model in self.models.items():
# need to pull state out of this somehow
model.integrate(t, self.dt)
self.states[name].append(model.vrs)
if 'spike' in model.outputs:
if model.outputs['spike'] == 1:
self.spikes[model.name].append(t)
def simulate(self, length=1000, buffer=10000):
index = 0
if self.fn:
self.writer.create(self.fn, self.models, self.spikes.keys(),
length / self.dt)
for i in arange(0, length, self.dt):
index += 1
self.integrate(i)
if index % buffer == 0 and self.fn:
self.save()
for key, value in self.states.items():
self.states[key] = []
if self.fn:
if index % buffer != 0 and self.fn:
self.save()
for name, data in self.spikes.items():
self.writer.writeOutputs(name, data)
self.writer.finish()
def save(self):
for name, data in self.states.items():
self.writer.writeModel(name, data)
class Simulation(object):
def __init__(self, dt=0.01, fn=None):
self.dt = dt
self.models = OrderedDict()
self.states = OrderedDict()
self.spikes = OrderedDict()
self.fn = fn
self.writer = SimWriter()
def addModel(self, model):
self.models[model.name] = model
self.states[model.name] = []
self.spikes[model.name] = []
def integrate(self,t):
for name, model in self.models.items():
# need to pull state out of this somehow
model.integrate(t, self.dt)
self.states[name].append(model.vrs)
if 'spike' in model.outputs:
if model.outputs['spike'] == 1:
self.spikes[model.name].append(t)
def simulate(self, length=1000, buffer=10000):
index = 0
if self.fn:
self.writer.create(self.fn, self.models, self.spikes.keys(), length/self.dt)
for i in arange(0, length, self.dt):
index += 1
self.integrate(i)
if index % buffer == 0 and self.fn:
self.save()
for key, value in self.states.items():
self.states[key] = []
if self.fn:
if index % buffer != 0 and self.fn:
self.save()
for name, data in self.spikes.items():
self.writer.writeOutputs(name, data)
self.writer.finish()
def save(self):
for name, data in self.states.items():
self.writer.writeModel(name, data)