def forward(self, graph_list, node_feat, edge_feat):
graph_sizes = [graph_list[i].num_nodes for i in range(len(graph_list))]
node_degs = [
torch.Tensor(graph_list[i].degs) + 1
for i in range(len(graph_list))
]
node_degs = torch.cat(node_degs).unsqueeze(1)
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
if isinstance(node_feat, torch.cuda.FloatTensor):
n2n_sp = n2n_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_degs = node_degs.cuda()
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
node_degs = Variable(node_degs)
h = self.sortpooling_embedding(node_feat, edge_feat, n2n_sp, e2n_sp,
subg_sp, graph_sizes, node_degs)
return h
def forward(self, graph_list, node_feat, edge_feat):
graph_sizes = [graph_list[i].num_nodes for i in range(len(graph_list))]
# node_degs = [torch.Tensor(graph_list[i].degs) + 1 for i in range(len(graph_list))]
# node_degs = torch.cat(node_degs).unsqueeze(1)
dv = node_feat.device
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
n2n_sp, e2n_sp, subg_sp = n2n_sp.to(dv), e2n_sp.to(dv), subg_sp.to(dv)
# node_degs = node_degs.to(dv)
node_degs = 0
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
# node_degs = Variable(node_degs)
h = self.node_level_embedding(node_feat, edge_feat, n2n_sp, e2n_sp,
node_degs)
h = self.graph_level_embedding(h, subg_sp, graph_sizes)
# return regular term
reg_term = self.get_reg(self.reg)
return h, (reg_term / subg_sp.size()[0])
def forward(self, graph_list, node_feat):
graph_sizes = [graph_list[i].num_nodes for i in range(len(graph_list))]
# graph_sizes是一个存储每个图的顶点数的list
node_degs = [
torch.Tensor(graph_list[i].degs) + 1
for i in range(len(graph_list))
]
# 每个顶点的度，并且因为原来没有self-loop，所以现在要+1
node_degs = torch.cat(node_degs).unsqueeze(1)
# 一个batch的图的度矩阵的拼接
non_zero, n2n_sp, _, __ = S2VLIB.PrepareMeanField(graph_list)
# n2n_sp matrix，[total_num_nodes, total_num_nodes]
# non_zero是有邻边的索引 2 * E
# 一个batch中所有图的顶点数总和
if isinstance(node_feat, torch.cuda.FloatTensor):
n2n_sp = n2n_sp.cuda()
node_degs = node_degs.cuda()
node_feat = Variable(node_feat)
n2n_sp = Variable(n2n_sp) # Adjacent matrix
node_degs = Variable(node_degs) # D^-1
h = self.sortpooling_embedding(non_zero, node_feat, n2n_sp,
graph_sizes, node_degs)
return h
def forward(self,
graph_list,
node_feat,
edge_feat,
pool_global=True,
n2n_grad=False,
e2n_grad=False):
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
if type(node_feat) is torch.cuda.FloatTensor:
n2n_sp = n2n_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp, requires_grad=n2n_grad)
e2n_sp = Variable(e2n_sp, requires_grad=e2n_grad)
subg_sp = Variable(subg_sp)
h = self.mean_field(node_feat, edge_feat, n2n_sp, e2n_sp, subg_sp,
pool_global)
if n2n_grad or e2n_grad:
sp_dict = {'n2n': n2n_sp, 'e2n': e2n_sp}
return h, sp_dict
else:
return h
def forward(self, graphs, nodeFeats, edgeFeats):
graphSizes = [graphs[i].num_nodes for i in range(len(graphs))]
nodeDegs = [torch.Tensor(graphs[i].degs) + 1
for i in range(len(graphs))]
nodeDegs = torch.cat(nodeDegs).unsqueeze(1)
n2nSp, e2nSp, _ = S2VLIB.PrepareMeanField(graphs)
if isinstance(nodeFeats, torch.cuda.FloatTensor):
n2nSp = n2nSp.cuda()
e2nSp = e2nSp.cuda()
nodeDegs = nodeDegs.cuda()
nodeFeats = Variable(nodeFeats)
if edgeFeats is not None:
edgeFeats = Variable(edgeFeats)
n2nSp = Variable(n2nSp)
e2nSp = Variable(e2nSp)
nodeDegs = Variable(nodeDegs)
convGraphs = self.graphConvLayers(nodeFeats, edgeFeats,
n2nSp, e2nSp, graphSizes, nodeDegs)
if self.poolingType == 'adaptive':
return self.adptivePoolLayer(convGraphs, nodeFeats, graphSizes)
else:
spGraphs = self.sortPoolLayer(convGraphs, nodeFeats, graphSizes)
if self.endingLayers == 'weight_vertices':
return self.weightVerticesLayers(spGraphs, len(graphSizes))
else:
return self.conv1dLayers(spGraphs, len(graphSizes))
def forward(self, graph_list, istraining=True):
node_feat = S2VLIB.ConcatNodeFeats(graph_list)
sp_list = S2VLIB.PrepareMeanField(graph_list)
version = get_torch_version()
if not istraining:
if version >= 0.4:
torch.set_grad_enabled(False)
else:
node_feat = Variable(node_feat.data, volatile=True)
h = self.mean_field(node_feat, sp_list)
if not istraining: # recover
if version >= 0.4:
torch.set_grad_enabled(True)
return h
def forward(self, graph_list, node_feat, edge_feat):
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
if type(node_feat) is torch.cuda.FloatTensor:
n2n_sp = n2n_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_feat = Variable(node_feat)
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
h = self.mean_field(node_feat, edge_feat, n2n_sp, e2n_sp, subg_sp)
return h
def forward(self, graph_list, node_feat, edge_feat):
graph_sizes = [graph_list[i].num_nodes for i in range(len(graph_list))]
node_degs = [
torch.Tensor(graph_list[i].degs) + 1
for i in range(len(graph_list))
]
node_degs = torch.cat(node_degs).unsqueeze(1)
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
n2n_sp2 = n2n_sp.to_dense()
n2n_sp2 = torch.mm(n2n_sp2, n2n_sp2)
for idx in range(sum(graph_sizes)):
n2n_sp2[idx, idx] = 0
n2n_sp2[n2n_sp2 != 0] = 1
"""Get 2-hop degree, 0-hop """
n_graphs = len(graph_sizes)
list_degs_2 = []
start_idx = 0
for g_idx in range(n_graphs):
A = n2n_sp2[start_idx:start_idx + graph_sizes[g_idx],
start_idx:start_idx + graph_sizes[g_idx]]
degs = torch.sum(A, dim=1)
start_idx += graph_sizes[g_idx]
list_degs_2.append(degs)
node_degs2 = [list_degs_2[i] + 1 for i in range(len(graph_list))]
node_degs2 = torch.cat(node_degs2).unsqueeze(1)
if isinstance(node_feat, torch.cuda.FloatTensor):
n2n_sp = n2n_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_degs = node_degs.cuda()
n2n_sp2 = n2n_sp2.cuda()
node_degs2 = node_degs2.cuda()
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
node_degs = Variable(node_degs)
node_degs2 = Variable(node_degs2)
h = self.sortpooling_embedding(node_feat, edge_feat, n2n_sp, n2n_sp2,
e2n_sp, subg_sp, graph_sizes, node_degs,
node_degs2)
return h
def forward(self, graph_list, node_feat, edge_feat):
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
if is_cuda_float(node_feat):
n2n_sp = n2n_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
h = self.mean_field(node_feat, edge_feat, n2n_sp, e2n_sp, subg_sp)
return h
def forward(self, graph_list, node_feat, edge_feat):
n2e_sp, e2e_sp, e2n_sp, subg_sp = S2VLIB.PrepareLoopyBP(graph_list)
if type(node_feat) is torch.cuda.FloatTensor:
n2e_sp = n2e_sp.cuda()
e2e_sp = e2e_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_feat = Variable(node_feat)
edge_feat = Variable(edge_feat)
n2e_sp = Variable(n2e_sp)
e2e_sp = Variable(e2e_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
h = self.loopy_bp(node_feat, edge_feat, n2e_sp, e2e_sp, e2n_sp, subg_sp)
return h
def forward(self, graph_list, node_feat, edge_feat):
n2e_sp, e2e_sp, e2n_sp, subg_sp = S2VLIB.PrepareLoopyBP(graph_list)
if is_cuda_float(node_feat):
n2e_sp = n2e_sp.cuda()
e2e_sp = e2e_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2e_sp = Variable(n2e_sp)
e2e_sp = Variable(e2e_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
h = self.loopy_bp(node_feat, edge_feat, n2e_sp, e2e_sp, e2n_sp,
subg_sp)
return h
def forward(self, graph_list, node_feat, edge_feat):
n2n_sp, e2n_sp, subg_sp = S2VLIB.PrepareMeanField(graph_list)
# if type(node_feat) is torch.cuda.FloatTensor:
if torch.cuda.is_available():
n2n_sp = n2n_sp.cuda()
e2n_sp = e2n_sp.cuda()
subg_sp = subg_sp.cuda()
node_feat = Variable(node_feat)
if edge_feat is not None:
edge_feat = Variable(edge_feat)
n2n_sp = Variable(n2n_sp)
e2n_sp = Variable(e2n_sp)
subg_sp = Variable(subg_sp)
# print("nf", node_feat)
# print("ef", edge_feat)
# print("n2n", n2n_sp)
# print("e2n", e2n_sp)
# print("subg", subg_sp)
h = self.mean_field(node_feat, edge_feat, n2n_sp, e2n_sp, subg_sp)
return h