def run_protected_plugin_runner_no_process_list(options, plugin, **kwargs):
if 'data' in kwargs.keys():
tu.set_plugin_list(options, plugin, kwargs['data'])
else:
tu.set_plugin_list(options, plugin)
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
return exp
def run_protected_plugin_runner_no_process_list(options, plugin, **kwargs):
if 'data' in list(kwargs.keys()):
tu.set_plugin_list(options, plugin, kwargs['data'])
else:
tu.set_plugin_list(options, plugin)
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
return exp
def run_protected_plugin_runner(options):
try:
plugin_runner = PluginRunner(options)
exp = plugin_runner.run_plugin_list(options)
print exp
except ImportError as e:
print("Failed to run test as libraries not available (%s)," % (e) +
" passing test")
pass
def test_create_smaller_data_block(self):
options = tu.set_experiment('tomo')
plugin = 'savu.plugins.reshape.downsample_filter'
tu.set_plugin_list(options, plugin)
out_data_name = options['plugin_list'][1]['data']['out_datasets'][0]
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
self.assertEqual(exp.index['in_data'][out_data_name].get_shape(),
(91, 68, 80))
def test_create_smaller_data_block(self):
options = tu.set_experiment('tomo')
plugin = 'savu.plugins.reshape.downsample_filter'
tu.set_plugin_list(options, plugin)
out_data_name = options['plugin_list'][1]['data']['out_datasets'][0]
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
self.assertEqual(exp.index['in_data'][out_data_name].get_shape(),
(91, 68, 80))
def fake_plugin_runner(options):
# Stripped down version of the plugin runner
# Loads the loader plugin but stops before processing plugins
plugin_runner = PluginRunner(options)
plugin_runner.exp = Experiment(options)
plugin_list = plugin_runner.exp.meta_data.plugin_list.plugin_list
exp = plugin_runner.exp
pu.plugin_loader(exp, plugin_list[0])
exp._set_nxs_file()
return plugin_runner
def main(input_args=None):
[options, args] = __option_parser()
if input_args:
args = input_args
__check_input_params(args)
options = _set_options(options, args)
plugin_runner = PluginRunner(options)
plugin_runner._run_plugin_list()
def run_protected_plugin_runner_no_process_list(options, plugin, **kwargs):
try:
if 'data' in kwargs.keys():
tu.set_plugin_list(options, plugin, kwargs['data'])
else:
tu.set_plugin_list(options, plugin)
plugin_runner = PluginRunner(options)
exp = plugin_runner.run_plugin_list(options)
return exp
except ImportError as e:
print("Failed to run test as libraries not available (%s)," % (e) +
" passing test")
pass
def plugin_runner_load_plugin(options):
plugin_runner = PluginRunner(options)
plugin_runner.exp = Experiment(options)
plugin_list = plugin_runner.exp.meta_data.plugin_list.plugin_list
exp = plugin_runner.exp
pu.plugin_loader(exp, plugin_list[0])
exp._set_nxs_file()
plugin_dict = plugin_list[1]
plugin = pu.get_plugin(plugin_dict['id'])
plugin.exp = exp
return plugin
def plugin_runner_load_plugin(options):
plugin_runner = PluginRunner(options)
plugin_runner.exp = Experiment(options)
plugin_list = plugin_runner.exp.meta_data.plugin_list.plugin_list
exp = plugin_runner.exp
pu.plugin_loader(exp, plugin_list[0])
exp._set_nxs_filename()
plugin_dict = plugin_list[1]
plugin = pu.load_plugin(plugin_dict['id'])
plugin.exp = exp
return plugin
def plugin_runner_real_plugin_run(options):
plugin_runner = PluginRunner(options)
plugin_list_inst = plugin_runner.exp.meta_data.plugin_list
plugin_list = plugin_list_inst.plugin_list
plugin_runner._run_plugin_list_check(plugin_list_inst)
exp = plugin_runner.exp
pu.plugin_loader(exp, plugin_list[0])
start_in_data = copy.deepcopy(exp.index['in_data'])
in_data = exp.index["in_data"][list(exp.index["in_data"].keys())[0]]
out_data_objs, stop = in_data._load_data(1)
exp._clear_data_objects()
exp.index['in_data'] = copy.deepcopy(start_in_data)
for key in out_data_objs[0]:
exp.index["out_data"][key] = out_data_objs[0][key]
plugin = pu.plugin_loader(exp, plugin_list[1])
plugin._run_plugin(exp, plugin_runner)
def plugin_runner_real_plugin_run(options):
plugin_runner = PluginRunner(options)
plugin_runner.exp = Experiment(options)
plugin_list = plugin_runner.exp.meta_data.plugin_list.plugin_list
plugin_runner._run_plugin_list_check(plugin_list)
exp = plugin_runner.exp
pu.plugin_loader(exp, plugin_list[0])
start_in_data = copy.deepcopy(exp.index['in_data'])
in_data = exp.index["in_data"][exp.index["in_data"].keys()[0]]
out_data_objs, stop = in_data._load_data(1)
exp._clear_data_objects()
exp.index['in_data'] = copy.deepcopy(start_in_data)
for key in out_data_objs[0]:
exp.index["out_data"][key] = out_data_objs[0][key]
plugin = pu.plugin_loader(exp, plugin_list[1])
plugin._run_plugin(exp, plugin_runner)
def plugin_runner(options):
plugin_runner = PluginRunner(options)
return plugin_runner._run_plugin_list()
def _run_plugin_list(self, options):
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
return exp
def run_protected_plugin_runner(options):
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
return exp
def run_protected_plugin_runner(options):
plugin_runner = PluginRunner(options)
exp = plugin_runner._run_plugin_list()
return exp
def main():
[options, args] = __option_parser()
__check_input_params(args)
options = _set_options(options, args)
plugin_runner = PluginRunner(options)
plugin_runner._run_plugin_list()
def plugin_runner(options):
# the real plugin runner runs a full plugin list
plugin_runner = PluginRunner(options)
return plugin_runner._run_plugin_list()
def plugin_runner(options):
plugin_runner = PluginRunner(options)
return plugin_runner._run_plugin_list()
def main():
[options, args] = __option_parser()
__check_input_params(args)
options = _set_options(options, args)
plugin_runner = PluginRunner(options)
plugin_runner._run_plugin_list()
