def xpp_check(tmp_path, ode_id, Nall=0, Nerr=0, Nwarn=0):
sbml_file = tmp_path / f"{ode_id}.xml"
xpp_file = DATA_DIR / "xpp" / f"{ode_id}.ode"
xpp.xpp2sbml(xpp_file=xpp_file, sbml_file=sbml_file)
vresults = validate_sbml(sbml_file, units_consistency=False)
assert vresults.all_count == Nall
assert vresults.error_count == Nerr
assert vresults.warning_count == Nwarn
def _validate_file(sbmlpath, units_consistency=True, Nall=0):
"""Validate given SBML file.
Helper function called by the other tests.
:param sbmlpath:
:param units_consistency:
:return:
"""
v_results = validate_sbml(sbmlpath, units_consistency=units_consistency)
assert v_results
assert Nall == v_results.all_count
def test_check_sbml() -> None:
vresults = validate_sbml(DEMO_SBML, units_consistency=True)
assert vresults.is_perfect()
def test_validate_sbml():
vresults = validate_sbml(GALACTOSE_SINGLECELL_SBML, units_consistency=True)
assert vresults.is_valid()