def test_add(self):
sbol3.set_namespace('https://github.com/synbiodex/pysbol3')
doc = sbol3.Document()
non_top_level = sbol3.Interface()
with self.assertRaises(TypeError):
doc.add(non_top_level)
seq = sbol3.Sequence('seq1')
doc.add(seq)
seq2 = doc.find(seq.identity)
self.assertEqual(seq.identity, seq2.identity)
def test_type_validation(self):
# Test the validation of types on owned object properties by
# going behind the scenes to set a bad value
sbol3.set_namespace('https://github.com/synbiodex/pysbol3')
c1 = sbol3.Component('c1', sbol3.SBO_DNA)
report = c1.validate()
self.assertEqual(0, len(report))
c1._owned_objects[sbol3.SBOL_FEATURES] = [
sbol3.Interface(), sbol3.Implementation('i1')
]
report = c1.validate()
# Expecting 2 errors, one for each inappropriate value
self.assertEqual(2, len(report))
def test_add(self):
sbol3.set_namespace('https://github.com/synbiodex/pysbol3')
doc = sbol3.Document()
non_top_level = sbol3.Interface()
with self.assertRaises(TypeError):
doc.add(non_top_level)
seq = sbol3.Sequence('seq1')
added_seq = doc.add(seq)
# Document.add should return the object
# See https://github.com/SynBioDex/pySBOL3/issues/272
self.assertEqual(seq, added_seq)
seq2 = doc.find(seq.identity)
self.assertEqual(seq.identity, seq2.identity)
def test_create(self):
interface = sbol3.Interface()
self.assertIsNotNone(interface)
self.assertEqual(sbol3.SBOL_INTERFACE, interface.type_uri)