def test_name_index_equality():
db1 = ScreedSequenceDB(testfa)
db2 = ScreedSequenceDB_ByIndex(testfa)
# must use something other than the obj itself for comparison...
v1 = sorted([ (v.name, v.seq) for v in db1.itervalues() ])
v2 = sorted([ (v.name, v.seq) for v in db2.itervalues() ])
assert v1 == v2, (v1, v2)
def test_name_index_equality():
db1 = ScreedSequenceDB(testfa)
db2 = ScreedSequenceDB_ByIndex(testfa)
# must use something other than the obj itself for comparison...
v1 = sorted([ (v.name, v.seq) for v in db1.itervalues() ])
v2 = sorted([ (v.name, v.seq) for v in db2.itervalues() ])
assert v1 == v2, (v1, v2)
def test_name_iterator_methods():
db = ScreedSequenceDB(testfa)
# test the various iterator methods for equal results from db
a = sorted([ (x, db[x]) for x in db ])
b = sorted([ i for i in db.iteritems() ])
c = sorted([ (v.name, v) for v in db.itervalues() ])
assert a == b
assert a == c
def test_name_iterator_methods():
db = ScreedSequenceDB(testfa)
# test the various iterator methods for equal results from db
a = sorted([ (x, db[x]) for x in db ])
b = sorted([ i for i in db.iteritems() ])
c = sorted([ (v.name, v) for v in db.itervalues() ])
assert a == b
assert a == c
def test_seqinfodict_by_name():
db1 = ScreedSequenceDB(testfa)
sd = db1.seqInfoDict
m = sorted([ y.id for (x, y) in sd.iteritems() ])
n = sorted([ x.id for x in sd.itervalues() ])
assert m == n, (m, n)
def test_pickle_ByName():
db = ScreedSequenceDB(testfa)
ofp = StringIO()
dump(db, ofp)
ifp = StringIO(ofp.getvalue())
db2 = load(ifp)
assert db.filepath == db2.filepath
