def bamtools(self):
i = self.__path('bamtools')
cmd = "git clone {url} {d}".format(url=i.url, d=i.build_dir)
Utils.run(cmd)
i = self.__path('bamtools')
cmd = "mkdir -p build && cd build && CC=gcc-4.8 CXX=g++-4.8 cmake -DCMAKE_INSTALL_PREFIX:PATH={local_dir} .. && make -j {num_cores} install".format(
local_dir=shellquote(i.local_dir), num_cores=self.num_cores())
Utils.run_in_dir(cmd, i.build_dir)
def bamtools(self):
i = self.__path('bamtools')
cmd = "git clone {url} {d}".format(url=i.url, d=i.build_dir)
Utils.run(cmd)
i = self.__path('bamtools')
#cmd = "mkdir -p build && cd build && CC=gcc-4.8 CXX=g++-4.8 cmake -DCMAKE_INSTALL_PREFIX:PATH={local_dir} .. && make -j {num_cores} install".format(
# local_dir=shellquote(i.local_dir), num_cores=self.num_cores())
if(sys.platform == "darwin"):
cmd = "mkdir -p build && cd build && CC=clang CXX=clang++ cmake -DCMAKE_INSTALL_PREFIX:PATH={local_dir} .. && make -j {num_cores} install".format(
local_dir=shellquote(i.local_dir), num_cores=self.num_cores())
else:
if self.args.clang:
cmd = "mkdir -p build && cd build && CC=clang CXX=clang++ cmake -DCMAKE_INSTALL_PREFIX:PATH={local_dir} .. && make -j {num_cores} install".format(
local_dir=shellquote(i.local_dir), num_cores=self.num_cores())
else:
cmd = "mkdir -p build && cd build && CC=gcc-4.8 CXX=g++-4.8 cmake -DCMAKE_INSTALL_PREFIX:PATH={local_dir} .. && make -j {num_cores} install".format(
local_dir=shellquote(i.local_dir), num_cores=self.num_cores())
Utils.run_in_dir(cmd, i.build_dir)
def main():
args = parse_args()
s = Setup(args)
if args.print_libs:
print "Available installs:"
count = 1
installs = s.allSetUps
installs.sort()
for set in installs:
print count , ")" , set
count = count + 1
elif args.addBashCompletion:
cmd = "cat bashCompletes/* >> ~/.bash_completion"
Utils.run(cmd)
if args.bib_cpp:
if args.dev:
cmd = "echo \"complete -F _bibCppTools proto\" >> ~/.bash_completion"
Utils.run(cmd)
cmd = "echo \"complete -F _bibCppTools bioalg\" >> ~/.bash_completion"
Utils.run(cmd)
cmd = "echo \"complete -F _bibCppTools euler\" >> ~/.bash_completion"
Utils.run(cmd)
else:
s.setup()
def cppitertools(self):
self.__git(self.__path('cppitertools'))
i = self.__path('cppitertools')
cmd = "cd {d} && git checkout d4f79321842dd584f799a7d51d3e066a2cdb7cac".format(d=shellquote(i.local_dir))
Utils.run(cmd)
def __git(self, i):
cmd = "git clone {url} {d}".format(url=i.url, d=shellquote(i.local_dir))
Utils.run(cmd)
def cppitertools(self):
self.__git(self.__path('cppitertools'))
i = self.__path('cppitertools')
cmd = "cd {d} && git checkout d4f79321842dd584f799a7d51d3e066a2cdb7cac".format(
d=shellquote(i.local_dir))
Utils.run(cmd)
def __git(self, i):
cmd = "git clone {url} {d}".format(url=i.url,
d=shellquote(i.local_dir))
Utils.run(cmd)