Exemplo n.º 1
0
def test_from_genbank():
    testfile = get_testfile('nisin.gbk')
    bp_rec = SeqIO.read(testfile, 'genbank')
    rec = Record.from_genbank(testfile)
    assert isinstance(rec, Record)
    assert rec.id == bp_rec.id
    assert rec.seq == bp_rec.seq
    # SNAG: Can't compare Reference objects in Biopython :(
    # So delete them to make the test work.
    del rec.annotations['references']
    del bp_rec.annotations['references']
    assert rec.annotations == bp_rec.annotations
    assert rec.description == bp_rec.description
Exemplo n.º 2
0
def test_clusters():
    testfile = get_testfile('nisin.gbk')
    rec = Record.from_genbank(testfile)
    assert len(rec.clusters) == 1