def gene(seq_name):
PATH = "./sequences/" + seq_name
s1 = Seq()
s1.read_fasta(PATH)
context = {
'gene_name': seq_name,
'gene_contents': s1.bases
}
contents = read_template_html_file('./html/gene.html').render(context=context)
return contents
elif msg.startswith("COMP"):
parts = msg.split(" ")
if len(parts) == 2 and parts[0] == "COMP":
termcolor.cprint("COMP", 'green')
seq = Seq(parts[1])
complem = seq.complement()
termcolor.cprint(f"{complem}\n", 'white')
cs.send(f"{complem}\n".encode())
cs.close()
elif msg.startswith("REV"):
parts = msg.split(" ")
if len(parts) == 2 and parts[0] == "REV":
termcolor.cprint("REV", 'green')
seq = Seq(parts[1])
rev = seq.reverse()
termcolor.cprint(f"{rev}\n", 'white')
cs.send(f"{rev}\n".encode())
cs.close()
elif msg.startswith("GENE"):
parts = msg.split(" ")
if len(parts) == 2 and parts[0] == "GENE":
termcolor.cprint("GENE", 'green')
filename = f"{parts[1]}.txt"
seq = Seq()
seq.read_fasta(filename)
termcolor.cprint(f"{seq}\n", 'white')
cs.send(f"{seq}\n".encode())
cs.close()
from seq import Seq
print("-----| Exercise 9 |------")
s = Seq()
s.read_fasta("U5.txt")
print(f"Sequence: (Length: {s.len()}) {s}")
print(f"\tBases: {s.count()}")
print(f"\tRev: {s.reverse()}")
print(f"\tComp: {s.complement()}")
cs.close()
termcolor.cprint(f"{info}", 'white')
elif msg.startswith("COMP"):
slices = msg.split(" ")
if len(slices) == 2 and slices[0] == "COMP":
termcolor.cprint("COMP", 'green')
seq = Seq(slices[1])
comp = seq.complement()
cs.send(f"{comp}\n".encode())
cs.close()
termcolor.cprint(f"{comp}\n", 'white')
elif msg.startswith("REV"):
slices = msg.split(" ")
if len(slices) == 2 and slices[0] == "REV":
termcolor.cprint("REV", 'green')
seq = Seq(slices[1])
rev = seq.reverse()
cs.send(f"{rev}\n".encode())
cs.close()
termcolor.cprint(f"{rev}\n", 'white')
elif msg.startswith("GENE"):
slices = msg.split(" ")
if len(slices) == 2 and slices[0] == "GENE":
termcolor.cprint("GENE", 'green')
filename = f"{slices[1]}.txt"
seq = Seq()
seq.read_fasta(filename) # Comment: try-except
cs.send(f"{seq}\n".encode())
cs.close()
termcolor.cprint(f"{seq}\n", 'white')
