def get_input_data():
config = read_configure()
corpus = get_corpus_processor(config)
corpus.prepare()
train_data_generator_func = corpus.get_generator_func(corpus.TRAIN)
eval_data_generator_func = corpus.get_generator_func(corpus.EVAL)
corpus_meta_data = corpus.get_meta_info()
tags_data = generate_tagset(corpus_meta_data['tags'])
train_data = list(train_data_generator_func())
eval_data = list(eval_data_generator_func())
tag_lookup = Lookuper({v: i for i, v in enumerate(tags_data)})
vocab_data_file = './data/unicode_char_list.txt'
vocabulary_lookup = index_table_from_file(vocab_data_file)
train_x, train_y = preprocss(train_data, tag_lookup, vocabulary_lookup)
if eval_data:
test_x, test_y = preprocss(eval_data, tag_lookup, vocabulary_lookup)
else:
test_x, test_y = None, None
return config, (train_x, train_y), (test_x,
test_y), tag_lookup, vocabulary_lookup
def test_build(datadir, tmpdir):
processor_builder = ProcessorBuilder()
# setup test processor
lookup_processor = LookupProcessor()
vocabulary_lookup_table = Lookuper({"a": 1, "b": 2, "c": 3})
lookup_processor.add_vocabulary_lookup_table(vocabulary_lookup_table)
tag_lookup_table = Lookuper({"tag-a": 1, "tag-b": 2, "tag-c": 3})
lookup_processor.add_tag_lookup_table(tag_lookup_table)
lookup_processor_handle = processor_builder.add_processor(lookup_processor)
processor_builder.add_preprocess(lookup_processor_handle)
processor_builder.add_postprocess(lookup_processor_handle)
processor_builder.save()
config = processor_builder.serialize(tmpdir)
dircmp_obj = filecmp.dircmp(datadir, tmpdir)
assert not dircmp_obj.diff_files
assert config == {
"version": "1.0",
"instance": {
"LookupProcessor_0": {
"class":
"deliverable_model.builtin.processor.lookup_processor.LookupProcessor",
"parameter": {
"lookup_table": ["vocabulary", "tag"],
"padding_parameter": {},
},
}
},
"pipeline": {
"pre": ["LookupProcessor_0"],
"post": ["LookupProcessor_0"]
},
}
assert processor_builder.get_dependency() == ["seq2annotation"]
def index_table_from_corpus(corpus=None):
from seq2annotation.input import Lookuper
index_table = {}
tmp_text_list = [sample.text for sample in corpus]
text_list = []
for text in tmp_text_list:
text_list.extend(text)
text_list = sorted(set(text_list))
for index, word in enumerate(text_list):
index_table[word] = index + 1
return Lookuper(index_table)
def test_build(datadir, tmpdir):
lookup_processor = LookupProcessor()
vocabulary_lookup_table = Lookuper({"a": 1, "b": 2, "c": 3})
lookup_processor.add_vocabulary_lookup_table(vocabulary_lookup_table)
tag_lookup_table = Lookuper({"tag-a": 1, "tag-b": 2, "tag-c": 3})
lookup_processor.add_tag_lookup_table(tag_lookup_table)
assert lookup_processor.get_config() == {
"lookup_table": ["vocabulary", "tag"],
"padding_parameter": {},
}
lookup_processor.serialize(tmpdir)
match, mismatch, errors = filecmp.cmpfiles(datadir,
tmpdir, ["tag", "vocabulary"],
shallow=False)
assert len(match) == 2
def build_vacablookuper_from_corpus(*corpus_tuples):
char_list = []
for corpus in corpus_tuples:
for sample in corpus:
char_list.extend(sample.text)
char_list = sorted(list(set(char_list)))
char_list.insert(0, '<pad>')
index_table = {}
index_counter = 0
for key in char_list:
index_table[key] = index_counter
index_counter += 1
return Lookuper(index_table)
def build_vacablookuper_from_list(*lists):
char_list = []
for ls in lists:
char_list.extend(ls)
char_list = sorted(list(set(char_list)))
if char_list[0] != '<pad>':
char_list.insert(0, '<pad>')
index_table = {}
index_counter = 1
for key in char_list:
index_table[key] = index_counter
index_counter += 1
return Lookuper(index_table)
def _keras_train(self, training_data: TrainingData,
cfg: RasaNLUModelConfig, **kwargs: Any) -> None:
from tensorflow.python.keras.layers import Input, Masking
from tensorflow.python.keras.models import Sequential
from tf_crf_layer.layer import CRF
from tf_crf_layer.loss import crf_loss
from tf_crf_layer.metrics import crf_accuracy
from seq2annotation.input import generate_tagset
from seq2annotation.input import build_input_func
from seq2annotation.input import Lookuper
config = self.component_config
if 'result_dir' not in config:
config['result_dir'] = tempfile.mkdtemp()
# read data according configure
train_data_generator_func = kwargs.get('addons_tf_input_fn')
corpus_meta_data = kwargs.get('addons_tf_input_meta')
config['tags_data'] = generate_tagset(corpus_meta_data['tags'])
# train and evaluate model
train_input_func = build_input_func(train_data_generator_func, config)
tag_lookuper = Lookuper(
{v: i
for i, v in enumerate(config['tags_data'])})
maxlen = 25
offset_data = train_input_func()
train_x, train_y = self._keras_data_preprocss(offset_data,
tag_lookuper, maxlen)
EPOCHS = 1
tag_size = tag_lookuper.size()
model = Sequential()
model.add(Input(shape=(25, 768)))
model.add(Masking())
model.add(CRF(tag_size))
model.compile('adam', loss=crf_loss)
model.summary()
model.compile('adam', loss=crf_loss, metrics=[crf_accuracy])
model.fit(train_x, train_y, epochs=EPOCHS)
def preprocss(data, maxlen=None, intent_lookup_table=None):
raw_x = []
raw_y = []
raw_intent = []
for offset_data in data:
tags = offset_to_biluo(offset_data)
words = offset_data.text
label = offset_data.extra_attr[
config['intent_field']] if config['intent_field'] not in [
"label"
] else getattr(offset_data, config['intent_field'])
tag_ids = [tag_lookuper.lookup(i) for i in tags]
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x.append(word_ids)
raw_y.append(tag_ids)
raw_intent.append(label)
if not intent_lookup_table:
raw_intent_set = list(set(raw_intent))
intent_lookup_table = Lookuper(
{v: i
for i, v in enumerate(raw_intent_set)})
intent_int_list = [intent_lookup_table.lookup(i) for i in raw_intent]
if not maxlen:
maxlen = max(len(s) for s in raw_x)
x = tf.keras.preprocessing.sequence.pad_sequences(
raw_x, maxlen, padding='post') # right padding
# lef padded with -1. Indeed, any integer works as it will be masked
# y_pos = pad_sequences(y_pos, maxlen, value=-1)
# y_chunk = pad_sequences(y_chunk, maxlen, value=-1)
y = tf.keras.preprocessing.sequence.pad_sequences(raw_y,
maxlen,
value=0,
padding='post')
intent_np_array = np.array(intent_int_list)
intent_one_hot = one_hot(intent_np_array, np.max(intent_np_array) + 1)
return x, intent_one_hot, y, intent_lookup_table
def preprocss(data, intent_lookup_table=None):
raw_x = []
raw_y = []
raw_intent = []
for offset_data in data:
tags = offset_to_biluo(offset_data)
words = offset_data.text
label = offset_data.label
tag_ids = [tag_lookuper.lookup(i) for i in tags]
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x.append(word_ids)
raw_y.append(tag_ids)
raw_intent.append(label)
if not intent_lookup_table:
raw_intent_set = list(set(raw_intent))
intent_lookup_table = Lookuper(
{v: i
for i, v in enumerate(raw_intent_set)})
intent_int_list = [intent_lookup_table.lookup(i) for i in raw_intent]
maxlen = max(len(s) for s in raw_x)
x = tf.keras.preprocessing.sequence.pad_sequences(
raw_x, maxlen, padding='post') # right padding
# lef padded with -1. Indeed, any integer works as it will be masked
# y_pos = pad_sequences(y_pos, maxlen, value=-1)
# y_chunk = pad_sequences(y_chunk, maxlen, value=-1)
y = tf.keras.preprocessing.sequence.pad_sequences(raw_y,
maxlen,
value=0,
padding='post')
return x, numpy.array(intent_int_list), y, intent_lookup_table
config = read_configure()
corpus = get_corpus_processor(config)
corpus.prepare()
train_data_generator_func = corpus.get_generator_func(corpus.TRAIN)
eval_data_generator_func = corpus.get_generator_func(corpus.EVAL)
corpus_meta_data = corpus.get_meta_info()
raw_tag_data = corpus_meta_data['tags']
tags_data = generate_tagset(corpus_meta_data['tags'])
train_data = list(train_data_generator_func())
eval_data = list(eval_data_generator_func())
tag_lookuper = Lookuper({v: i for i, v in enumerate(tags_data)})
vocab_data_file = os.path.join(os.path.dirname(__file__), '../data/unicode_char_list.txt')
vocabulary_lookuper = index_table_from_file(vocab_data_file)
def classification_report(y_true, y_pred, labels):
"""
Similar to the one in sklearn.metrics,
reports per classs recall, precision and F1 score
"""
y_true = np.asarray(y_true).ravel()
y_pred = np.asarray(y_pred).ravel()
corrects = Counter(yt for yt, yp in zip(y_true, y_pred) if yt == yp)
y_true_counts = Counter(y_true)
y_pred_counts = Counter(y_pred)
def main():
# get configure
config = read_configure()
# get train/test corpus
corpus = get_corpus_processor(config)
corpus.prepare()
train_data_generator_func = corpus.get_generator_func(corpus.TRAIN)
eval_data_generator_func = corpus.get_generator_func(corpus.EVAL)
corpus_meta_data = corpus.get_meta_info()
# process str data to onehot
ner_tags_data = generate_tagset(corpus_meta_data["tags"])
cls_tags_data = corpus_meta_data["labels"]
train_data = list(train_data_generator_func())
eval_data = list(eval_data_generator_func())
ner_tag_lookuper = Lookuper({v: i for i, v in enumerate(ner_tags_data)})
cls_tag_lookuper = Lookuper({v: i for i, v in enumerate(cls_tags_data)})
vocab_data_file = config.get("vocabulary_file")
if not vocab_data_file:
# load built in vocabulary file
vocab_data_file = os.path.join(
os.path.dirname(__file__), "../data/unicode_char_list.txt"
)
vocabulary_lookuper = index_table_from_file(vocab_data_file)
def preprocss(data, maxlen, **kwargs):
raw_x = []
raw_y_ner = []
raw_y_cls = []
for offset_data in data:
tags = offset_to_biluo(offset_data)
label = offset_data.label
words = offset_data.text
tag_ids = [ner_tag_lookuper.lookup(i) for i in tags]
label_id = cls_tag_lookuper.lookup(label)
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x.append(word_ids)
raw_y_ner.append(tag_ids)
raw_y_cls.append(label_id)
if maxlen is None:
maxlen = max(len(s) for s in raw_x)
print(">>> maxlen: {}".format(maxlen))
x = tf.keras.preprocessing.sequence.pad_sequences(
raw_x, maxlen, padding="post"
) # right padding
y_ner = tf.keras.preprocessing.sequence.pad_sequences(
raw_y_ner, maxlen, value=0, padding="post"
)
from keras.utils import to_categorical
y_cls = np.array(raw_y_cls)
y_cls = y_cls[:, np.newaxis]
y_cls = to_categorical(y_cls, kwargs.get('cls_dims', 81))
return x, y_ner, y_cls
# get Parameters (controller)
EPOCHS = config.get("epochs", 10)
BATCHSIZE = config.get("batch_size", 32)
LEARNINGRATE = config.get("learning_rate", 0.001)
MAX_SENTENCE_LEN = config.get("max_sentence_len", 25)
# get Parameters (model structure)
EMBED_DIM = config.get("embedding_dim", 300)
USE_ATTENTION_LAYER = config.get("use_attention_layer", False)
BiLSTM_STACK_CONFIG = config.get("bilstm_stack_config", [])
BATCH_NORMALIZATION_AFTER_EMBEDDING_CONFIG = config.get(
"use_batch_normalization_after_embedding", False)
BATCH_NORMALIZATION_AFTER_BILSTM_CONFIG = config.get(
"use_batch_normalization_after_bilstm", False)
CRF_PARAMS = config.get("crf_params", {})
# get train/test data for training model
vacab_size = vocabulary_lookuper.size()
tag_size = ner_tag_lookuper.size()
label_size = cls_tag_lookuper.size()
train_x, train_y_ner, train_y_cls = preprocss(train_data, MAX_SENTENCE_LEN, **{'cls_dims':label_size})
test_x, test_y_ner, test_y_cls = preprocss(eval_data, MAX_SENTENCE_LEN, **{'cls_dims':label_size})
# build model
input_length = MAX_SENTENCE_LEN
input_layer = Input(shape=(input_length,), dtype='float', name='input_layer')
# encoder
with tf.keras.backend.name_scope("Encoder"):
embedding_layer = Embedding(vacab_size,
EMBED_DIM,
mask_zero=True,
input_length=input_length,
name='embedding')(input_layer)
# feature extractor
with tf.keras.backend.name_scope("biLSTM"):
if BATCH_NORMALIZATION_AFTER_EMBEDDING_CONFIG:
embedding_layer = BatchNormalization()(embedding_layer)
biLSTM = embedding_layer
for bilstm_config in BiLSTM_STACK_CONFIG:
biLSTM = Bidirectional(LSTM(return_sequences=True, **bilstm_config, name='biLSTM'))(biLSTM)
if BATCH_NORMALIZATION_AFTER_BILSTM_CONFIG:
biLSTM = BatchNormalization()(biLSTM)
if USE_ATTENTION_LAYER:
biLSTM = GlobalAttentionLayer()(biLSTM)
# NER branch
with tf.keras.backend.name_scope("NER_branch"):
crf = CRF(tag_size, name="crf", **CRF_PARAMS)(biLSTM)
loss_func = ConditionalRandomFieldLoss()
# classification branch
chosen = 'lstm_cls'
with tf.keras.backend.name_scope("CLS_branch"):
from tensorflow.keras.layers import Dense, Flatten, Dropout
# add paragraph vector
#paragraph_vector = get_paragraph_vector(embedding_layer)
if chosen == "lstm_cls":
cls_flat_lstm = Flatten()(biLSTM)
#cls_flat_lstm = tf.keras.layers.concatenate([cls_flat_lstm, paragraph_vector])
classification_dense = Dropout(0.2)(cls_flat_lstm)
classification_dense = SetLearningRate(Dense(label_size, activation='sigmoid', name='CLS'), lr=0.001, is_ada=True)(classification_dense)
elif chosen == "conv_cls":
from tensorflow.keras.layers import Conv1D, MaxPooling1D
embedding_layer = BatchNormalization()(embedding_layer)
cls_conv_emb = Conv1D(32, 3, activation='relu', padding='same')(embedding_layer)
cls_conv_emb = Conv1D(64, 3, activation='relu', padding='same')(cls_conv_emb)
cls_conv_emb = MaxPooling1D(2)(cls_conv_emb)
cls_conv_emb = Conv1D(128, 3, activation='relu', dilation_rate=1, padding='same')(cls_conv_emb)
cls_conv_emb = Conv1D(128, 3, activation='relu', dilation_rate=2, padding='same')(cls_conv_emb)
cls_conv_emb = Conv1D(128, 3, activation='relu', dilation_rate=5, padding='same')(cls_conv_emb)
cls_conv_emb = Conv1D(256, 1, activation='relu', padding='same')(cls_conv_emb)
cls_conv_emb = MaxPooling1D(2)(cls_conv_emb)
cls_flat = BatchNormalization()(cls_conv_emb)
cls_flat = Flatten()(cls_flat)
classification_dense = Dropout(0.2)(cls_flat)
classification_dense = Dense(label_size, activation='sigmoid', name='CLS')(classification_dense)
# merge NER and Classification
model = Model(inputs=[input_layer], outputs=[crf, classification_dense])
model.summary()
callbacks_list = []
tensorboard_callback = tf.keras.callbacks.TensorBoard(
#log_dir=create_dir_if_needed(config["summary_log_dir"])
log_dir='.\\results\\summary_log_dir',
batch_size=BATCHSIZE,
)
callbacks_list.append(tensorboard_callback)
checkpoint_callback = tf.keras.callbacks.ModelCheckpoint(
os.path.join(create_dir_if_needed(config["model_dir"]), "cp-{epoch:04d}.ckpt"),
load_weights_on_restart=True,
verbose=1,
)
callbacks_list.append(checkpoint_callback)
metrics_list = []
metrics_list.append(crf_accuracy)
metrics_list.append(SequenceCorrectness())
metrics_list.append(sequence_span_accuracy)
# early_stop = tf.keras.callbacks.EarlyStopping(monitor='val_loss', # early stop index
# patience=3, # early stop delay epoch
# verbose=2, # display mode
# mode='auto')
# callbacks_list.append(early_stop)
from mtnlpmodel.trainer.loss_func_util import FocalLoss
adam_optimizer = tf.keras.optimizers.Adam(learning_rate=LEARNINGRATE, beta_1=0.9, beta_2=0.999, amsgrad=False)
model.compile(optimizer=adam_optimizer,
#loss={'crf': loss_func, 'CLS': 'sparse_categorical_crossentropy'},
loss={'crf': loss_func, 'CLS': FocalLoss()},
loss_weights={'crf': 1., 'CLS': 100}, # set weight of loss
#metrics={'crf': SequenceCorrectness(), 'CLS': 'sparse_categorical_accuracy'} )
metrics={'crf': SequenceCorrectness(), 'CLS': 'categorical_accuracy'})
model.fit(
train_x,
{'crf': train_y_ner, 'CLS': train_y_cls},
epochs=EPOCHS,
batch_size=BATCHSIZE,
validation_data=[test_x, {'crf': test_y_ner, 'CLS': test_y_cls}],
callbacks=callbacks_list,
)
model.save(create_file_dir_if_needed(config["h5_model_file"]))
model.save_weights(create_file_dir_if_needed(config["h5_weights_file"]))
tf.keras.experimental.export_saved_model(
model, create_or_rm_dir_if_needed(config["saved_model_dir"])
)
mt_export_as_deliverable_model(
create_dir_if_needed(config["deliverable_model_dir"]),
keras_saved_model=config["saved_model_dir"],
converter_for_request=ConverterForRequest(),
converter_for_response=ConverterForMTResponse(),
lookup_tables={'vocab_lookup':vocabulary_lookuper,
'tag_lookup':ner_tag_lookuper,
'label_lookup':cls_tag_lookuper},
padding_parameter={"maxlen": MAX_SENTENCE_LEN, "value": 0, "padding": "post"},
addition_model_dependency=["tf-crf-layer"],
custom_object_dependency=["tf_crf_layer"],
)
def input_data_process(config, **hyperparams):
# read NER/CLS individually (only support *.conllx)
input_mode = config['input_mode']
if input_mode == 'multi':
# multi input
data_ner = Corpus.read_from_file(config['ner_data'])
data_cls = Corpus.read_from_file(config['cls_data'])
else:
# single input
data = Corpus.read_from_file(config['data'])
data_ner = data
data_cls = data
# get train/test corpus
ner_tags = get_tag_from_corpus(data_ner)
cls_labels = get_label_from_corpus(data_cls)
test_ratio = config['test_ratio']
ner_train_data, ner_eval_data = data_ner.train_test_split(
test_size=test_ratio, random_state=50)
cls_train_data, cls_eval_data = data_cls.train_test_split(
test_size=test_ratio, random_state=50)
ner_data_tuple, cls_data_tuple = random_sampling_to_samesize(
(ner_train_data, ner_eval_data), # mainly for multi input
(cls_train_data, cls_eval_data)) # make sure cls & ner have
# same size dataset
ner_train_data, ner_eval_data = ner_data_tuple
cls_train_data, cls_eval_data = cls_data_tuple
# build lookupers
ner_tag_lookuper = Lookuper(
{v: i
for i, v in enumerate(generate_tagset(ner_tags))})
cls_label_lookuper = Lookuper({v: i for i, v in enumerate(cls_labels)})
vocab_data_file = config.get("vocabulary_file", None)
if not vocab_data_file:
# get vacab_data for corpus
vocabulary_lookuper = build_vacablookuper_from_corpus(
*(data_ner, data_cls)) # from corpus
else:
vocabulary_lookuper = index_table_from_file(
vocab_data_file) # from vocab_file
# ner (data&tag) str->int
def ner_preprocss(data, maxlen, cls_info_len):
raw_x_ner = []
raw_y_ner = []
for offset_data in data:
tags = offset_to_biluo(offset_data)
words = offset_data.text
tag_ids = [ner_tag_lookuper.lookup(i) for i in tags]
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x_ner.append(word_ids)
raw_y_ner.append(tag_ids)
if maxlen is None:
maxlen = max(len(s) for s in raw_x_ner)
maxlen_mt = maxlen + cls_info_len
print(">>> maxlen: {}".format(maxlen))
x_ner = tf.keras.preprocessing.sequence.pad_sequences(
raw_x_ner, maxlen, padding="post") # right padding
y_ner = tf.keras.preprocessing.sequence.pad_sequences(raw_y_ner,
maxlen,
value=0,
padding="post")
y_ner = tf.keras.preprocessing.sequence.pad_sequences(y_ner,
maxlen_mt,
value=0,
padding="pre")
return x_ner, y_ner
# cls (data&label) str->int
def cls_preprocss(data, maxlen, **kwargs):
raw_x_cls = []
raw_y_cls = []
for offset_data in data:
label = offset_data.label
words = offset_data.text
label_id = cls_label_lookuper.lookup(label)
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x_cls.append(word_ids)
raw_y_cls.append(label_id)
if maxlen is None:
maxlen = max(len(s) for s in raw_x_cls)
print(">>> maxlen: {}".format(maxlen))
x_cls = tf.keras.preprocessing.sequence.pad_sequences(
raw_x_cls, maxlen, padding="post") # right padding
from keras.utils import to_categorical
y_cls = np.array(raw_y_cls)
y_cls = y_cls[:, np.newaxis]
y_cls = to_categorical(y_cls, kwargs.get('cls_dims', 81))
return x_cls, y_cls
ner_train_x, ner_train_y = ner_preprocss(
ner_train_data, hyperparams['MAX_SENTENCE_LEN'],
hyperparams['CLS2NER_KEYWORD_LEN'])
ner_test_x, ner_test_y = ner_preprocss(ner_eval_data,
hyperparams['MAX_SENTENCE_LEN'],
hyperparams['CLS2NER_KEYWORD_LEN'])
cls_train_x, cls_train_y = cls_preprocss(
cls_train_data, hyperparams['MAX_SENTENCE_LEN'],
**{'cls_dims': cls_label_lookuper.size()})
cls_test_x, cls_test_y = cls_preprocss(
cls_eval_data, hyperparams['MAX_SENTENCE_LEN'],
**{'cls_dims': cls_label_lookuper.size()})
#cls_class_weight = get_class_weight(cls_train_data, cls_label_lookuper)
output_dict = {
'ner_train_x': ner_train_x,
'ner_train_y': ner_train_y,
'ner_test_x': ner_test_x,
'ner_test_y': ner_test_y,
'cls_train_x': cls_train_x,
'cls_train_y': cls_train_y,
'cls_test_x': cls_test_x,
'cls_test_y': cls_test_y,
'ner_tag_lookuper': ner_tag_lookuper,
'cls_label_lookuper': cls_label_lookuper,
'vocabulary_lookuper': vocabulary_lookuper,
}
return output_dict
def main():
config = read_configure()
corpus = get_corpus_processor(config)
corpus.prepare()
train_data_generator_func = corpus.get_generator_func(corpus.TRAIN)
eval_data_generator_func = corpus.get_generator_func(corpus.EVAL)
corpus_meta_data = corpus.get_meta_info()
tags_data = generate_tagset(corpus_meta_data["tags"])
train_data = list(train_data_generator_func())
eval_data = list(eval_data_generator_func())
tag_lookuper = Lookuper({v: i for i, v in enumerate(tags_data)})
vocab_data_file = config.get("vocabulary_file")
if not vocab_data_file:
# load built in vocabulary file
vocab_data_file = os.path.join(os.path.dirname(__file__),
"../data/unicode_char_list.txt")
vocabulary_lookuper = index_table_from_file(vocab_data_file)
def preprocss(data, maxlen):
raw_x = []
raw_y = []
for offset_data in data:
tags = offset_to_biluo(offset_data)
words = offset_data.text
tag_ids = [tag_lookuper.lookup(i) for i in tags]
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x.append(word_ids)
raw_y.append(tag_ids)
if maxlen is None:
maxlen = max(len(s) for s in raw_x)
print(">>> maxlen: {}".format(maxlen))
x = tf.keras.preprocessing.sequence.pad_sequences(
raw_x, maxlen, padding="post") # right padding
# lef padded with -1. Indeed, any integer works as it will be masked
# y_pos = pad_sequences(y_pos, maxlen, value=-1)
# y_chunk = pad_sequences(y_chunk, maxlen, value=-1)
y = tf.keras.preprocessing.sequence.pad_sequences(raw_y,
maxlen,
value=0,
padding="post")
return x, y
MAX_SENTENCE_LEN = config.get("max_sentence_len", 25)
train_x, train_y = preprocss(train_data, MAX_SENTENCE_LEN)
test_x, test_y = preprocss(eval_data, MAX_SENTENCE_LEN)
EPOCHS = config["epochs"]
EMBED_DIM = config["embedding_dim"]
USE_ATTENTION_LAYER = config.get("use_attention_layer", False)
BiLSTM_STACK_CONFIG = config.get("bilstm_stack_config", [])
BATCH_NORMALIZATION_AFTER_EMBEDDING_CONFIG = config.get(
"use_batch_normalization_after_embedding", False)
BATCH_NORMALIZATION_AFTER_BILSTM_CONFIG = config.get(
"use_batch_normalization_after_bilstm", False)
CRF_PARAMS = config.get("crf_params", {})
vacab_size = vocabulary_lookuper.size()
tag_size = tag_lookuper.size()
model = Sequential()
model.add(
Embedding(vacab_size,
EMBED_DIM,
mask_zero=True,
input_length=MAX_SENTENCE_LEN))
if BATCH_NORMALIZATION_AFTER_EMBEDDING_CONFIG:
model.add(BatchNormalization())
for bilstm_config in BiLSTM_STACK_CONFIG:
model.add(Bidirectional(LSTM(return_sequences=True, **bilstm_config)))
if BATCH_NORMALIZATION_AFTER_BILSTM_CONFIG:
model.add(BatchNormalization())
if USE_ATTENTION_LAYER:
model.add(GlobalAttentionLayer())
model.add(CRF(tag_size, name="crf", **CRF_PARAMS))
# print model summary
model.summary()
callbacks_list = []
tensorboard_callback = tf.keras.callbacks.TensorBoard(
log_dir=create_dir_if_needed(config["summary_log_dir"]))
callbacks_list.append(tensorboard_callback)
checkpoint_callback = tf.keras.callbacks.ModelCheckpoint(
os.path.join(create_dir_if_needed(config["model_dir"]),
"cp-{epoch:04d}.ckpt"),
load_weights_on_restart=True,
verbose=1,
)
callbacks_list.append(checkpoint_callback)
metrics_list = []
metrics_list.append(SequenceCorrectness())
metrics_list.append(SequenceSpanAccuracy())
loss_func = ConditionalRandomFieldLoss()
# loss_func = crf_loss
model.compile("adam", loss={"crf": loss_func}, metrics=metrics_list)
model.fit(
train_x,
train_y,
epochs=EPOCHS,
validation_data=[test_x, test_y],
callbacks=callbacks_list,
)
# Save the model
model.save(create_file_dir_if_needed(config["h5_model_file"]))
tf.keras.experimental.export_saved_model(
model, create_dir_if_needed(config["saved_model_dir"]))
export_as_deliverable_model(
create_dir_if_needed(config["deliverable_model_dir"]),
keras_saved_model=config["saved_model_dir"],
vocabulary_lookup_table=vocabulary_lookuper,
tag_lookup_table=tag_lookuper,
padding_parameter={
"maxlen": MAX_SENTENCE_LEN,
"value": 0,
"padding": "post"
},
addition_model_dependency=["tf-crf-layer"],
custom_object_dependency=["tf_crf_layer"],
)
def main():
# get configure
config = read_configure()
# get train/test corpus
corpus = get_corpus_processor(config)
corpus.prepare()
train_data_generator_func = corpus.get_generator_func(corpus.TRAIN)
eval_data_generator_func = corpus.get_generator_func(corpus.EVAL)
corpus_meta_data = corpus.get_meta_info()
# process str data to onehot
ner_tags_data = generate_tagset(corpus_meta_data["tags"])
cls_tags_data = corpus_meta_data["labels"]
train_data = list(train_data_generator_func())
eval_data = list(eval_data_generator_func())
ner_tag_lookuper = Lookuper({v: i for i, v in enumerate(ner_tags_data)})
cls_tag_lookuper = Lookuper({v: i for i, v in enumerate(cls_tags_data)})
vocab_data_file = config.get("vocabulary_file")
if not vocab_data_file:
# load built in vocabulary file
vocab_data_file = os.path.join(os.path.dirname(__file__),
"../data/unicode_char_list.txt")
vocabulary_lookuper = index_table_from_file(vocab_data_file)
def preprocss(data, maxlen):
raw_x = []
raw_y_ner = []
raw_y_cls = []
for offset_data in data:
tags = offset_to_biluo(offset_data)
label = offset_data.label
words = offset_data.text
tag_ids = [ner_tag_lookuper.lookup(i) for i in tags]
label_id = cls_tag_lookuper.lookup(label)
word_ids = [vocabulary_lookuper.lookup(i) for i in words]
raw_x.append(word_ids)
raw_y_ner.append(tag_ids)
raw_y_cls.append(label_id)
if maxlen is None:
maxlen = max(len(s) for s in raw_x)
print(">>> maxlen: {}".format(maxlen))
x = tf.keras.preprocessing.sequence.pad_sequences(
raw_x, maxlen, padding="post") # right padding
y_ner = tf.keras.preprocessing.sequence.pad_sequences(raw_y_ner,
maxlen,
value=0,
padding="post")
y_cls = np.array(raw_y_cls)
y_cls = y_cls[:, np.newaxis]
return x, y_ner, y_cls
# get Parameters (controller)
EPOCHS = config.get("epochs", 10)
BATCHSIZE = config.get("batch_size", 32)
LEARNINGRATE = config.get("learning_rate", 0.0001)
MAX_SENTENCE_LEN = config.get("max_sentence_len", 25)
# get Parameters (model structure)
EMBED_DIM = config.get("embedding_dim", 300)
BiLSTM_STACK_CONFIG = config.get("bilstm_stack_config", [])
# get train/test data for training model
train_x, train_y_ner, train_y_cls = preprocss(train_data, MAX_SENTENCE_LEN)
test_x, test_y_ner, test_y_cls = preprocss(eval_data, MAX_SENTENCE_LEN)
vacab_size = vocabulary_lookuper.size()
# tag_size = ner_tag_lookuper.size()
label_size = cls_tag_lookuper.size()
# finetuning correlation code
adam_optimizer = tf.keras.optimizers.Adam(learning_rate=LEARNINGRATE,
beta_1=0.9,
beta_2=0.999,
amsgrad=False)
index_dict = {
'optimizer': adam_optimizer,
'loss': 'sparse_categorical_crossentropy',
'metrics': ['sparse_categorical_accuracy']
}
warm_start_list = ['embedding', 'bidirectional',
'batch_normalization'] # layer in list is frozen
backbone_model_path = './mtnlpmodel/trainer/fine_tuning_trainer/save_weights/weights.h5'
output_dims = label_size
# model structure correlation code
# define new_layer for the task
new_task_output_layer = Dense(
output_dims, activation='softmax') # new softmax layer -> output
input_shape = MAX_SENTENCE_LEN
input_layer = Input(shape=(input_shape, ),
dtype='int32',
name='input_layer') # input
# backbone + transfer_learning function can use backbone to do some different job
# what you need is to define a new layer which is new_task_output_layer below
# this code is a sample for only text classification
# backbone output is biLSTM's output, so transfer_learning add a flatten layer to connect dense layer
# you can modify the structure in function transfer_learning to match your task demand
base_model = backbone_network(
BiLSTM_STACK_CONFIG,
input_layer=input_layer,
vacab_size=vacab_size,
EMBED_DIM=EMBED_DIM,
input_length=MAX_SENTENCE_LEN,
)
new_model = transfer_learning(input_shape, input_layer, base_model,
new_task_output_layer, index_dict,
backbone_model_path, warm_start_list)
# model output info correlation code
new_model.summary()
callbacks_list = []
tensorboard_callback = tf.keras.callbacks.TensorBoard(
#log_dir=create_dir_if_needed(config["summary_log_dir"])
log_dir='.\\results\\summary_log_dir',
batch_size=BATCHSIZE,
)
callbacks_list.append(tensorboard_callback)
checkpoint_callback = tf.keras.callbacks.ModelCheckpoint(
os.path.join(create_dir_if_needed(config["model_dir"]),
"cp-{epoch:04d}.ckpt"),
load_weights_on_restart=True,
verbose=1,
)
callbacks_list.append(checkpoint_callback)
metrics_list = []
metrics_list.append(crf_accuracy)
metrics_list.append(SequenceCorrectness())
metrics_list.append(sequence_span_accuracy)
early_stop = tf.keras.callbacks.EarlyStopping(
monitor='val_loss', # early stop index
patience=3, # early stop delay epoch
verbose=2, # display mode
mode='auto')
callbacks_list.append(early_stop)
new_model.fit(
train_x,
train_y_cls,
epochs=EPOCHS,
batch_size=BATCHSIZE,
validation_data=[test_x, test_y_cls],
callbacks=callbacks_list,
)
new_model.save(create_file_dir_if_needed(config["h5_model_file"]))
tf.keras.experimental.export_saved_model(
new_model, create_or_rm_dir_if_needed(config["saved_model_dir"]))
mt_export_as_deliverable_model(
create_dir_if_needed(config["deliverable_model_dir"]),
keras_saved_model=config["saved_model_dir"],
vocabulary_lookup_table=vocabulary_lookuper,
tag_lookup_table=ner_tag_lookuper,
label_lookup_table=cls_tag_lookuper,
padding_parameter={
"maxlen": MAX_SENTENCE_LEN,
"value": 0,
"padding": "post"
},
addition_model_dependency=["tf-crf-layer"],
custom_object_dependency=["tf_crf_layer"],
)
def test_build(datadir, tmpdir):
deliverable_model_builder = DeliverableModelBuilder(tmpdir)
# metadata builder
metadata_builder = MetadataBuilder()
meta_content = MetaContent("algorithmId-corpusId-configId-runId")
metadata_builder.set_meta_content(meta_content)
metadata_builder.save()
# processor builder
processor_builder = ProcessorBuilder()
lookup_processor = LookupProcessor()
vocabulary_lookup_table = Lookuper({"a": 1, "b": 2, "c": 3})
lookup_processor.add_vocabulary_lookup_table(vocabulary_lookup_table)
tag_lookup_table = Lookuper({"tag-a": 1, "tag-b": 2, "tag-c": 3})
lookup_processor.add_tag_lookup_table(tag_lookup_table)
lookup_processor_handle = processor_builder.add_processor(lookup_processor)
processor_builder.add_preprocess(lookup_processor_handle)
processor_builder.add_postprocess(lookup_processor_handle)
processor_builder.save()
# model builder
model_builder = ModelBuilder()
model_builder.add_keras_h5_model(datadir / "fixture" / "keras_h5_model")
model_builder.save()
#
deliverable_model_builder.add_processor(processor_builder)
deliverable_model_builder.add_metadata(metadata_builder)
deliverable_model_builder.add_model(model_builder)
metadata = deliverable_model_builder.save()
assert metadata == {
"version": "1.0",
"dependency": ["seq2annotation", "tensorflow"],
"processor": {
"version": "1.0",
"instance": {
"LookupProcessor_0": {
"class":
"deliverable_model.builtin.processor.lookup_processor.LookupProcessor",
"parameter": {
"lookup_table": ["vocabulary", "tag"],
"padding_parameter": {},
},
}
},
"pipeline": {
"pre": ["LookupProcessor_0"],
"post": ["LookupProcessor_0"]
},
},
"model": {
"version": "1.0",
"type": "keras_h5_model",
"custom_object_dependency": [],
"converter_for_request": {
"class_name":
"deliverable_model.builder.model.model_builder.SimpleConverterForRequest",
"config": {},
},
"converter_for_response": {
"class_name":
"deliverable_model.builder.model.model_builder.SimpleConverterForResponse",
"config": {},
},
},
"metadata": {
"version": "1.0",
"id": "algorithmId-corpusId-configId-runId"
},
}
#
dircmp_obj = filecmp.dircmp(datadir / "expected", tmpdir)
assert not dircmp_obj.diff_files