def build_seq_obj(self, code, gene_code, our_taxon_names, all_seqs):
"""Builds a SeqRecordExpanded object. I cannot be built, returns None.
"""
this_voucher_seqs = self.extract_sequence_from_all_seqs_in_db(all_seqs, code, gene_code)
if this_voucher_seqs == '?':
seq = '?' * self.gene_codes_metadata[gene_code]['length']
else:
seq = self.create_seq_record(this_voucher_seqs)
seq_record = SeqRecordExpanded(seq)
if code in our_taxon_names:
seq_record.voucher_code = code
seq_record.taxonomy = our_taxon_names[code]
seq_record.gene_code = gene_code
seq_record.reading_frame = self.gene_codes_metadata[gene_code]['reading_frame']
seq_record.table = self.gene_codes_metadata[gene_code]['genetic_code']
return seq_record
else:
return None
