def test_setDiff_1(self):
"""setDiffDroppedMissing.setDiff() should return things that do not intersect."""
missing = []
m = setD.Miss()
m.file = 'banana.maf'
m.seq1 = 'banana.chr1'
m.pos1 = 100
m.seq2 = 'apple.chr1'
m.pos2 = 200
missing.append(m)
dropped = {}
d = setD.Drop()
d.file = 'apple.maf'
d.name = 'apple.chr1'
d.start = 100
d.end = 200
dropped[d.name] = [d]
iSect = setD.intersect(dropped, missing)
result = setD.setDiff(missing, iSect)
self.assertEqual(m.file, result[0].file)
self.assertEqual(m.seq1, result[0].seq1)
self.assertEqual(m.pos1, result[0].pos1)
self.assertEqual(m.seq2, result[0].seq2)
self.assertEqual(m.pos2, result[0].pos2)
def test_intersect_6(self):
"""setDiffDroppedMissing.intersect() should return intersecting pairs. Testing starting positions."""
missing = []
m = setD.Miss()
m.file = 'banana.maf'
m.seq1 = 'banana.chr1'
m.pos1 = 99
m.seq2 = 'apple.chr1'
m.pos2 = 200
missing.append(m)
dropped = {}
d = setD.Drop()
d.file = 'banana.maf'
d.name = 'banana.chr1'
d.start = 100
d.end = 110
dropped[d.name] = [d]
result = setD.intersect(dropped, missing)
self.assertTrue(len(result) == 0)
def test_intersect_3(self):
"""setDiffDroppedMissing.intersect() should return empty list when the Missing sample pair is self-self."""
missing = []
m = setD.Miss()
m.file = 'banana.maf'
m.seq1 = 'banana.chr1'
m.pos1 = 100
m.seq2 = 'banana.chr1'
m.pos2 = 200
missing.append(m)
dropped = {}
d = setD.Drop()
d.file = 'apple.maf'
d.name = 'apple.chr1'
d.start = 100
d.end = 200
dropped[d.name] = [d]
result = setD.intersect(dropped, missing)
self.assertTrue(len(result) == 0)