def test_embl_to_dna(self):
i = 1
exp = self.multi[i]
obs = _embl_to_dna(self.multi_fp, seq_num=i+1)
exp = DNA(exp[0], metadata=exp[1], lowercase=True,
interval_metadata=exp[2])
self.assertEqual(exp, obs)
def test_embl_to_dna(self):
i = 1
exp = self.multi[i]
obs = _embl_to_dna(self.multi_fp, seq_num=i+1)
exp = DNA(exp[0], metadata=exp[1], lowercase=True,
interval_metadata=exp[2])
self.assertEqual(exp, obs)
def test_roundtrip_dna(self):
with io.StringIO() as fh:
_dna_to_embl(_embl_to_dna(self.single_rna_fp), fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_roundtrip_dna(self):
with io.StringIO() as fh:
_dna_to_embl(_embl_to_dna(self.single_rna_fp), fh)
obs = fh.getvalue()
with open(self.single_rna_fp) as fh:
exp = fh.read()
self.assertEqual(obs, exp)
def test_constructed_sequences(self):
with self.assertRaisesRegex(
EMBLFormatError,
r"There's no support for embl CON record"):
_embl_to_dna(self.embl_constructed_fp)
def test_constructed_sequences(self):
with self.assertRaisesRegex(EMBLFormatError,
r"There's no support for embl CON record"):
_embl_to_dna(self.embl_constructed_fp)