Exemplo n.º 1
0
 def test_newick_to_tree_node_convert_underscores(self):
     fh = StringIO('(_:0.1, _a, _b)__;')
     tree = _newick_to_tree_node(fh, convert_underscores=False)
     fh2 = StringIO()
     _tree_node_to_newick(tree, fh2)
     self.assertEquals(fh2.getvalue(), "('_':0.1,'_a','_b')'__';\n")
     fh2.close()
     fh.close()
Exemplo n.º 2
0
 def test_newick_to_tree_node_convert_underscores(self):
     fh = StringIO('(_:0.1, _a, _b)__;')
     tree = _newick_to_tree_node(fh, convert_underscores=False)
     fh2 = StringIO()
     _tree_node_to_newick(tree, fh2)
     self.assertEquals(fh2.getvalue(), "('_':0.1,'_a','_b')'__';\n")
     fh2.close()
     fh.close()
Exemplo n.º 3
0
    def test_tree_node_to_newick(self):
        for tree, newicks in self.trees_newick_lists:
            newick = newicks[0]
            fh = StringIO()
            _tree_node_to_newick(tree, fh)

            self.assertEqual(newick, fh.getvalue())

            fh.close()
Exemplo n.º 4
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    def test_tree_node_to_newick(self):
        for tree, newicks in self.trees_newick_lists:
            newick = newicks[0]
            fh = StringIO()
            _tree_node_to_newick(tree, fh)

            self.assertEqual(newick, fh.getvalue())

            fh.close()
Exemplo n.º 5
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    def test_roundtrip(self):
        for tree, newicks in self.trees_newick_lists:
            newick = newicks[0]
            fh = StringIO(newick)
            tree = _newick_to_tree_node(fh)
            fh2 = StringIO()
            _tree_node_to_newick(tree, fh2)
            fh2.seek(0)
            tree2 = _newick_to_tree_node(fh2)

            self.assertEqual(newick, fh2.getvalue())
            self._assert_equal(tree, tree2)

            fh.close()
            fh2.close()
Exemplo n.º 6
0
    def test_roundtrip(self):
        for tree, newicks in self.trees_newick_lists:
            newick = newicks[0]
            fh = StringIO(newick)
            tree = _newick_to_tree_node(fh)
            fh2 = StringIO()
            _tree_node_to_newick(tree, fh2)
            fh2.seek(0)
            tree2 = _newick_to_tree_node(fh2)

            self.assertEqual(newick, fh2.getvalue())
            self._assert_equal(tree, tree2)

            fh.close()
            fh2.close()