def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('restoration', parent_package, top_path)
config.add_data_dir('tests')
cython(['_unwrap_1d.pyx'], working_path=base_path)
cython(['_unwrap_2d.pyx'], working_path=base_path)
cython(['_unwrap_3d.pyx'], working_path=base_path)
cython(['_denoise_cy.pyx'], working_path=base_path)
cython(['_nl_means_denoising.pyx'], working_path=base_path)
config.add_extension('_unwrap_1d', sources=['_unwrap_1d.c'],
include_dirs=[get_numpy_include_dirs()])
unwrap_sources_2d = ['_unwrap_2d.c', 'unwrap_2d_ljmu.c']
config.add_extension('_unwrap_2d', sources=unwrap_sources_2d,
include_dirs=[get_numpy_include_dirs()])
unwrap_sources_3d = ['_unwrap_3d.c', 'unwrap_3d_ljmu.c']
config.add_extension('_unwrap_3d', sources=unwrap_sources_3d,
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_denoise_cy', sources=['_denoise_cy.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_nl_means_denoising',
sources=['_nl_means_denoising.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from skimage._build import cython
config = Configuration('zmuv', parent_package, top_path)
cython(['zmuv.pyx'], working_path=base_path)
config.add_extension(
'zmuv',
sources=['zmuv.c'],
include_dirs=[get_numpy_include_dirs()],
extra_compile_args=[
"-fopenmp",
"-pthread",
"-O3",
#"-march=native",
#"-mtune=native",
#"-funroll-all-loops",
#"-fomit-frame-pointer",
#"-msse4",
#"-ftree-vectorize",
#"-ftree-vectorizer-verbose=5",
#"-ffast-math",
#"-ftree-loop-distribution",
#"-funroll-loops",
#"-ftracer",
#"-ftree-parallelize-loops=4",
#"-foptimize-register-move",
#"-funswitch-loops",
],
extra_link_args=['-fopenmp'],
)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('measure', parent_package, top_path)
config.add_data_dir('tests')
cython([
'_ccomp.pyx', '_find_contours_cy.pyx', '_moments_cy.pyx',
'_marching_cubes_classic_cy.pyx', '_marching_cubes_lewiner_cy.pyx',
'_pnpoly.pyx'
],
working_path=base_path)
config.add_extension('_ccomp',
sources=['_ccomp.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_find_contours_cy',
sources=['_find_contours_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_moments_cy',
sources=['_moments_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_marching_cubes_classic_cy',
sources=['_marching_cubes_classic_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_marching_cubes_lewiner_cy',
sources=['_marching_cubes_lewiner_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_pnpoly',
sources=['_pnpoly.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('filters', parent_package, top_path)
cython([
'rank/core_cy.pyx', 'rank/generic_cy.pyx', 'rank/percentile_cy.pyx',
'rank/bilateral_cy.pyx', '_multiotsu.pyx'
],
working_path=base_path)
config.add_extension('rank.core_cy',
sources=['rank/core_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_multiotsu',
sources=['_multiotsu.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.generic_cy',
sources=['rank/generic_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.percentile_cy',
sources=['rank/percentile_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.bilateral_cy',
sources=['rank/bilateral_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('filter', parent_package, top_path)
config.add_data_dir('tests')
config.add_data_dir('rank/tests')
cython(['_ctmf.pyx'], working_path=base_path)
cython(['rank/core_cy.pyx'], working_path=base_path)
cython(['rank/generic_cy.pyx'], working_path=base_path)
cython(['rank/percentile_cy.pyx'], working_path=base_path)
cython(['rank/bilateral_cy.pyx'], working_path=base_path)
config.add_extension('_ctmf', sources=['_ctmf.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.core_cy', sources=['rank/core_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.generic_cy', sources=['rank/generic_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank.percentile_cy', sources=['rank/percentile_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank.bilateral_cy', sources=['rank/bilateral_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('transform', parent_package, top_path)
config.add_data_dir('tests')
cython([
'_hough_transform.pyx', '_warps_cy.pyx', '_radon_transform.pyx',
'_seam_carving.pyx'
],
working_path=base_path)
config.add_extension('_hough_transform',
sources=['_hough_transform.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_warps_cy',
sources=['_warps_cy.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_radon_transform',
sources=['_radon_transform.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_seam_carving',
sources=['_seam_carving.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('restoration', parent_package, top_path)
cython([
'_unwrap_1d.pyx', '_unwrap_2d.pyx', '_unwrap_3d.pyx',
'_denoise_cy.pyx', '_nl_means_denoising.pyx'
],
working_path=base_path)
cython(['_rolling_ball_cy.pyx'], working_path=base_path)
config.add_extension('_unwrap_1d',
sources=['_unwrap_1d.c'],
include_dirs=[get_numpy_include_dirs()])
unwrap_sources_2d = ['_unwrap_2d.c', 'unwrap_2d_ljmu.c']
config.add_extension('_unwrap_2d',
sources=unwrap_sources_2d,
include_dirs=[get_numpy_include_dirs()])
unwrap_sources_3d = ['_unwrap_3d.c', 'unwrap_3d_ljmu.c']
config.add_extension('_unwrap_3d',
sources=unwrap_sources_3d,
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_denoise_cy',
sources=['_denoise_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_nl_means_denoising',
sources=['_nl_means_denoising.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_rolling_ball_cy',
sources=['_rolling_ball_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('feature', parent_package, top_path)
config.add_data_files('orb_descriptor_positions.txt')
cython([
'corner_cy.pyx',
'censure_cy.pyx',
'orb_cy.pyx',
'_texture.pyx',
'_hoghistogram.pyx',
'_sift.pyx',
],
working_path=base_path)
# _haar uses c++, so it must be cythonized separately
cython(['_cascade.pyx', '_haar.pyx'], working_path=base_path)
config.add_extension('_cascade',
sources=['_cascade.cpp'],
include_dirs=[get_numpy_include_dirs()],
language="c++")
config.add_extension('corner_cy',
sources=['corner_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('censure_cy',
sources=['censure_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('orb_cy',
sources=['orb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_texture',
sources=['_texture.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_hoghistogram',
sources=['_hoghistogram.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_haar',
sources=['_haar.cpp'],
include_dirs=[get_numpy_include_dirs(), '../_shared'],
language="c++")
config.add_extension('_sift',
sources=['_sift.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
# pythran submodules
pythran.config.logger.setLevel(logging.INFO)
ext = pythran.dist.PythranExtension(
'skimage.feature.brief_cy',
sources=["skimage/feature/brief_pythran.py"],
config=['compiler.blas=none'])
config.ext_modules.append(ext)
ext = pythran.dist.PythranExtension(
'skimage.feature._hessian_det_appx',
sources=["skimage/feature/_hessian_det_appx_pythran.py"],
config=['compiler.blas=none'])
config.ext_modules.append(ext)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('segmentation', parent_package, top_path)
cython([
'_watershed_cy.pyx',
'_felzenszwalb_cy.pyx',
'_quickshift_cy.pyx',
'_slic.pyx',
],
working_path=base_path)
config.add_extension('_watershed_cy',
sources=['_watershed_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_felzenszwalb_cy',
sources=['_felzenszwalb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_quickshift_cy',
sources=['_quickshift_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_slic',
sources=['_slic.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from skimage._build import cython
config = Configuration('resample', parent_package, top_path)
config.add_data_dir('tests')
cython(['_resample.pyx'], working_path=base_path)
config.add_extension(
'_resample',
sources=['_resample.c'],
include_dirs=[get_numpy_include_dirs()],
extra_compile_args=[
"-fopenmp",
"-pthread",
"-O6",
"-march=native",
"-mtune=native",
"-funroll-all-loops",
"-fomit-frame-pointer",
"-march=native",
"-mtune=native",
"-msse4",
"-ftree-vectorize",
"-ftree-vectorizer-verbose=5",
],
extra_link_args=['-fopenmp'],
)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from skimage._build import cython
config = Configuration('resample', parent_package, top_path)
config.add_data_dir('tests')
cython(['_resample.pyx'], working_path=base_path)
config.add_extension(
'_resample',
sources=['_resample.c'],
include_dirs=[get_numpy_include_dirs()],
extra_compile_args=[
"-fopenmp",
"-pthread",
"-O6",
"-march=native",
"-mtune=native",
"-funroll-all-loops",
"-fomit-frame-pointer",
"-march=native",
"-mtune=native",
"-msse4",
"-ftree-vectorize",
"-ftree-vectorizer-verbose=5",
],
extra_link_args=['-fopenmp'],
)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('morphology', parent_package, top_path)
config.add_data_dir('tests')
cython([
'_watershed.pyx', '_skeletonize_cy.pyx', '_convex_hull.pyx',
'_greyreconstruct.pyx', '_extrema_cy.pyx'
],
working_path=base_path)
# _skeletonize_3d uses c++, so it must be cythonized separately
cython(['_skeletonize_3d_cy.pyx.in'], working_path=base_path)
config.add_extension('_watershed',
sources=['_watershed.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_cy',
sources=['_skeletonize_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_convex_hull',
sources=['_convex_hull.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_greyreconstruct',
sources=['_greyreconstruct.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_3d_cy',
sources=['_skeletonize_3d_cy.cpp'],
include_dirs=[get_numpy_include_dirs()],
language='c++')
config.add_extension('_extrema_cy',
sources=['_extrema_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('measure', parent_package, top_path)
config.add_data_dir('tests')
cython(['_ccomp.pyx'], working_path=base_path)
cython(['_find_contours_cy.pyx'], working_path=base_path)
cython(['_moments_cy.pyx'], working_path=base_path)
cython(['_marching_cubes_cy.pyx'], working_path=base_path)
cython(['_pnpoly.pyx'], working_path=base_path)
config.add_extension('_ccomp', sources=['_ccomp.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_find_contours_cy', sources=['_find_contours_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_moments_cy', sources=['_moments_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_marching_cubes_cy',
sources=['_marching_cubes_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_pnpoly', sources=['_pnpoly.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('segmentation', parent_package, top_path)
cython([
'_watershed_cy.pyx', '_felzenszwalb_cy.pyx', '_quickshift_cy.pyx',
'_slic.pyx', '_remap.pyx'
],
working_path=base_path)
config.add_extension('_watershed_cy',
sources=['_watershed_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_felzenszwalb_cy',
sources=['_felzenszwalb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_quickshift_cy',
sources=['_quickshift_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_slic',
sources=['_slic.c'],
include_dirs=[get_numpy_include_dirs()])
# note: the extra compiler flag -std=c++0x is needed to access the
# std::unordered_map container on some earlier gcc compilers. See:
# https://stackoverflow.com/a/3973692/224254
config.add_extension('_remap',
sources='_remap.cpp',
include_dirs=[get_numpy_include_dirs()],
language='c++',
extra_compile_args=['-std=c++0x'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('feature', parent_package, top_path)
config.add_data_dir('tests')
cython(['corner_cy.pyx'], working_path=base_path)
cython(['censure_cy.pyx'], working_path=base_path)
cython(['orb_cy.pyx'], working_path=base_path)
cython(['brief_cy.pyx'], working_path=base_path)
cython(['_texture.pyx'], working_path=base_path)
config.add_extension('corner_cy',
sources=['corner_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('censure_cy',
sources=['censure_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('orb_cy',
sources=['orb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('brief_cy',
sources=['brief_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_texture',
sources=['_texture.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('measure', parent_package, top_path)
cython([
'_find_contours_cy.pyx', '_find_contours_pbc_cy.pyx',
'_find_tips_pbc_cy.pyx', '_find_tips_kernel_cy.pyx'
],
working_path=base_path)
# config.add_extension('_ccomp', sources=['_ccomp.c'],
# include_dirs=[get_numpy_include_dirs()])
config.add_extension('_find_contours_cy',
sources=['_find_contours_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_find_contours_pbc_cy',
sources=['_find_contours_pbc_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_find_tips_pbc_cy',
sources=['_find_tips_pbc_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_find_tips_kernel_cy',
sources=['_find_tips_kernel_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('morphology', parent_package, top_path)
config.add_data_dir('tests')
cython(['cmorph.pyx'], working_path=base_path)
cython(['_watershed.pyx'], working_path=base_path)
cython(['_skeletonize_cy.pyx'], working_path=base_path)
cython(['_convex_hull.pyx'], working_path=base_path)
cython(['_greyreconstruct.pyx'], working_path=base_path)
config.add_extension('cmorph',
sources=['cmorph.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershed',
sources=['_watershed.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_cy',
sources=['_skeletonize_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_convex_hull',
sources=['_convex_hull.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_greyreconstruct',
sources=['_greyreconstruct.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('io', parent_package, top_path)
config.add_data_dir('tests')
config.add_data_files('_plugins/*.ini')
# This function tries to create C files from the given .pyx files. If
# it fails, we build the checked-in .c files.
cython(['_plugins/_colormixer.pyx', '_plugins/_histograms.pyx'],
working_path=base_path)
config.add_extension('_plugins._colormixer',
sources=['_plugins/_colormixer.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_plugins._histograms',
sources=['_plugins/_histograms.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_plugins._tifffile',
sources=['_plugins/tifffile.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("filter_iter", parent_package, top_path)
cython(["_filter_iter.pyx"], working_path=base_path)
config.add_extension("_filter_iter", sources=["_filter_iter.c"], include_dirs=[get_numpy_include_dirs()])
# config.add_extension('example_C_filters', sources=['example_C_filters.c'])
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("measure", parent_package, top_path)
config.add_data_dir("tests")
cython(["_find_contours.pyx"], working_path=base_path)
config.add_extension("_find_contours", sources=["_find_contours.c"], include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('draw', parent_package, top_path)
config.add_data_dir('tests')
cython(['_draw.pyx'], working_path=base_path)
config.add_extension('_draw', sources=['_draw.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('draw', parent_package, top_path)
cython(['_draw.pyx'], working_path=base_path)
config.add_extension('_draw',
sources=['_draw.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('graph', parent_package, top_path)
# This function tries to create C files from the given .pyx files. If
# it fails, try to build with pre-generated .c files.
cython(['_ncut_cy.pyx'], working_path=base_path)
config.add_extension('_ncut_cy',
sources=['_ncut_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('feature', parent_package, top_path)
config.add_data_dir('tests')
cython(['_greycomatrix.pyx'], working_path=base_path)
config.add_extension('_greycomatrix', sources=['_greycomatrix.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('graph', parent_package, top_path)
config.add_data_dir('tests')
# This function tries to create C files from the given .pyx files. If
# it fails, try to build with pre-generated .c files.
cython(['_ncut_cy.pyx'], working_path=base_path)
config.add_extension('_ncut_cy', sources=['_ncut_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('filter', parent_package, top_path)
config.add_data_dir('tests')
cython(['_ctmf.pyx'], working_path=base_path)
config.add_extension('_ctmf', sources=['_ctmf.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('WTP', parent_package, top_path)
# config.add_data_dir('tests')
cython(['_perform_WTP.pyx'], working_path=base_path)
WTP_sources = ['_perform_WTP.c', 'perform_WTP_ljmu.c']
config.add_extension('_perform_WTP',
sources=WTP_sources,
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('WTP', parent_package, top_path)
# config.add_data_dir('tests')
cython(['_perform_WTP.pyx'], working_path=base_path)
WTP_sources = ['_perform_WTP.c', 'perform_WTP_ljmu.c']
config.add_extension('_perform_WTP', sources=WTP_sources,
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("feature", parent_package, top_path)
config.add_data_dir("tests")
cython(["_texture.pyx"], working_path=base_path)
cython(["_template.pyx"], working_path=base_path)
config.add_extension("_texture", sources=["_texture.c"], include_dirs=[get_numpy_include_dirs(), "../_shared"])
config.add_extension("_template", sources=["_template.c"], include_dirs=[get_numpy_include_dirs(), "../_shared"])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('feature', parent_package, top_path)
config.add_data_dir('tests')
cython([
'corner_cy.pyx',
'censure_cy.pyx',
'orb_cy.pyx',
'brief_cy.pyx',
'_texture.pyx',
'_hessian_det_appx.pyx',
'_hoghistogram.pyx',
],
working_path=base_path)
# _haar uses c++, so it must be cythonized seperately
cython(['_cascade.pyx', '_haar.pyx'], working_path=base_path)
config.add_extension('_cascade',
sources=['_cascade.cpp'],
include_dirs=[get_numpy_include_dirs()],
language="c++")
config.add_extension('corner_cy',
sources=['corner_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('censure_cy',
sources=['censure_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('orb_cy',
sources=['orb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('brief_cy',
sources=['brief_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_texture',
sources=['_texture.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_hessian_det_appx',
sources=['_hessian_det_appx.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_hoghistogram',
sources=['_hoghistogram.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_haar',
sources=['_haar.cpp'],
include_dirs=[get_numpy_include_dirs(), '../_shared'],
language="c++")
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('_shared', parent_package, top_path)
config.add_data_dir('tests')
cython(['geometry.pyx'], working_path=base_path)
cython(['transform.pyx'], working_path=base_path)
config.add_extension('geometry', sources=['geometry.c'])
config.add_extension('transform', sources=['transform.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("transform", parent_package, top_path)
config.add_data_dir("tests")
cython(["_hough_transform.pyx"], working_path=base_path)
cython(["_warps_cy.pyx"], working_path=base_path)
config.add_extension("_hough_transform", sources=["_hough_transform.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension("_warps_cy", sources=["_warps_cy.c"], include_dirs=[get_numpy_include_dirs(), "../_shared"])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('_shared', parent_package, top_path)
config.add_data_dir('tests')
cython(['geometry.pyx'], working_path=base_path)
cython(['transform.pyx'], working_path=base_path)
config.add_extension('geometry', sources=['geometry.c'])
config.add_extension('transform',
sources=['transform.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('WFT', parent_package, top_path)
# config.add_data_dir('tests')
cython(['_perform_WFT.pyx'], working_path=base_path)
WTP_sources = ['_perform_WFT.c', 'wft2f.c']
# libraries platform dependent??
config.add_extension('_perform_WFT', sources=WTP_sources, libraries = ['fftw3', 'fftw3f', 'fftw3l', 'fftw3_threads',
'fftw3f_threads', 'fftw3l_threads'], include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('measure', parent_package, top_path)
config.add_data_dir('tests')
cython(['_find_contours.pyx'], working_path=base_path)
cython(['_moments.pyx'], working_path=base_path)
config.add_extension('_find_contours', sources=['_find_contours.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_moments', sources=['_moments.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('segmentation', parent_package, top_path)
cython(['_felzenszwalb_cy.pyx',
'_quickshift_cy.pyx',
'_slic.pyx'], working_path=base_path)
config.add_extension('_felzenszwalb_cy', sources=['_felzenszwalb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_quickshift_cy', sources=['_quickshift_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_slic', sources=['_slic.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('transform', parent_package, top_path)
config.add_data_dir('tests')
cython(['_hough_transform.pyx'], working_path=base_path)
cython(['_warps_cy.pyx'], working_path=base_path)
config.add_extension('_hough_transform', sources=['_hough_transform.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_warps_cy', sources=['_warps_cy.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'],
extra_compile_args=['-fopenmp'],
extra_link_args=['-fopenmp'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('WFT', parent_package, top_path)
# config.add_data_dir('tests')
cython(['_perform_WFT.pyx'], working_path=base_path)
WTP_sources = ['_perform_WFT.c', 'wft2f.c']
# libraries platform dependent??
config.add_extension('_perform_WFT',
sources=WTP_sources,
libraries=[
'fftw3', 'fftw3f', 'fftw3l', 'fftw3_threads',
'fftw3f_threads', 'fftw3l_threads'
],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from skimage._build import cython
config = Configuration('resample', parent_package, top_path)
cython(['_resample.pyx'], working_path=base_path)
config.add_extension(
'_resample',
sources=['_resample.c'],
include_dirs=[get_numpy_include_dirs()],
extra_compile_args=[
"-pthread",
"-O4",
"-fopenmp",
],
extra_link_args=["-fopenmp"]
)
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("io", parent_package, top_path)
config.add_data_dir("tests")
config.add_data_files("_plugins/*.ini")
# This function tries to create C files from the given .pyx files. If
# it fails, we build the checked-in .c files.
cython(["_plugins/_colormixer.pyx", "_plugins/_histograms.pyx"], working_path=base_path)
config.add_extension(
"_plugins._colormixer", sources=["_plugins/_colormixer.c"], include_dirs=[get_numpy_include_dirs()]
)
config.add_extension(
"_plugins._histograms", sources=["_plugins/_histograms.c"], include_dirs=[get_numpy_include_dirs()]
)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('io', parent_package, top_path)
config.add_data_files('_plugins/*.ini')
# This function tries to create C files from the given .pyx files. If
# it fails, we build the checked-in .c files.
cython(['_plugins/_colormixer.pyx', '_plugins/_histograms.pyx'],
working_path=base_path)
config.add_extension('_plugins._colormixer',
sources=['_plugins/_colormixer.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_plugins._histograms',
sources=['_plugins/_histograms.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('morphology', parent_package, top_path)
cython([
'_skeletonize_cy.pyx', '_convex_hull.pyx', '_grayreconstruct.pyx',
'_extrema_cy.pyx'
],
working_path=base_path)
# _skeletonize_3d uses c++, so it must be cythonized separately
cython(['_skeletonize_3d_cy.pyx.in'], working_path=base_path)
cython(['_extrema_cy.pyx'], working_path=base_path)
cython(['_flood_fill_cy.pyx'], working_path=base_path)
cython(['_max_tree.pyx'], working_path=base_path)
config.add_extension('_skeletonize_cy',
sources=['_skeletonize_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_convex_hull',
sources=['_convex_hull.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_grayreconstruct',
sources=['_grayreconstruct.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_max_tree',
sources=['_max_tree.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_3d_cy',
sources=['_skeletonize_3d_cy.cpp'],
include_dirs=[get_numpy_include_dirs()],
language='c++')
config.add_extension('_extrema_cy',
sources=['_extrema_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_flood_fill_cy',
sources=['_flood_fill_cy.c'],
include_dirs=[get_numpy_include_dirs()])
# add precomputed footprint decomposition data
config.add_data_files('ball_decompositions.npy', 'disk_decompositions.npy')
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("morphology", parent_package, top_path)
config.add_data_dir("tests")
cython(["_watershed.pyx"], working_path=base_path)
cython(["_skeletonize_cy.pyx"], working_path=base_path)
cython(["_convex_hull.pyx"], working_path=base_path)
cython(["_greyreconstruct.pyx"], working_path=base_path)
cython(["_skeletonize_3d_cy.pyx.in"], working_path=base_path)
config.add_extension("_watershed", sources=["_watershed.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension("_skeletonize_cy", sources=["_skeletonize_cy.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension("_convex_hull", sources=["_convex_hull.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension("_greyreconstruct", sources=["_greyreconstruct.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension(
"_skeletonize_3d_cy", sources=["_skeletonize_3d_cy.c"], include_dirs=[get_numpy_include_dirs()]
)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('feature', parent_package, top_path)
config.add_data_dir('tests')
cython(['corner_cy.pyx',
'censure_cy.pyx',
'orb_cy.pyx',
'brief_cy.pyx',
'_texture.pyx',
'_hessian_det_appx.pyx',
'_hoghistogram.pyx',
], working_path=base_path)
# _haar uses c++, so it must be cythonized separately
cython(['_cascade.pyx',
'_haar.pyx'], working_path=base_path)
config.add_extension('_cascade', sources=['_cascade.cpp'],
include_dirs=[get_numpy_include_dirs()],
language="c++")
config.add_extension('corner_cy', sources=['corner_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('censure_cy', sources=['censure_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('orb_cy', sources=['orb_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('brief_cy', sources=['brief_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_texture', sources=['_texture.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_hessian_det_appx', sources=['_hessian_det_appx.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_hoghistogram', sources=['_hoghistogram.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_haar', sources=['_haar.cpp'],
include_dirs=[get_numpy_include_dirs(), '../_shared'],
language="c++")
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('morphology', parent_package, top_path)
config.add_data_dir('tests')
cython(['_watershed.pyx',
'_skeletonize_cy.pyx',
'_convex_hull.pyx',
'_greyreconstruct.pyx',
'_extrema_cy.pyx'], working_path=base_path)
# _skeletonize_3d uses c++, so it must be cythonized separately
cython(['_skeletonize_3d_cy.pyx.in'], working_path=base_path)
cython(['_extrema_cy.pyx'], working_path=base_path)
cython(['_flood_fill_cy.pyx'], working_path=base_path)
cython(['_max_tree.pyx'], working_path=base_path)
config.add_extension('_watershed', sources=['_watershed.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_cy', sources=['_skeletonize_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_convex_hull', sources=['_convex_hull.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_greyreconstruct', sources=['_greyreconstruct.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_max_tree', sources=['_max_tree.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_3d_cy',
sources=['_skeletonize_3d_cy.cpp'],
include_dirs=[get_numpy_include_dirs()],
language='c++')
config.add_extension('_extrema_cy', sources=['_extrema_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_flood_fill_cy', sources=['_flood_fill_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('feature', parent_package, top_path)
config.add_data_dir('tests')
cython(['corner_cy.pyx'], working_path=base_path)
cython(['censure_cy.pyx'], working_path=base_path)
cython(['_brief_cy.pyx'], working_path=base_path)
cython(['_texture.pyx'], working_path=base_path)
cython(['_template.pyx'], working_path=base_path)
config.add_extension('corner_cy', sources=['corner_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('censure_cy', sources=['censure_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_brief_cy', sources=['_brief_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_texture', sources=['_texture.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('_template', sources=['_template.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('morphology', parent_package, top_path)
config.add_data_dir('tests')
cython(['cmorph.pyx'], working_path=base_path)
cython(['_watershed.pyx'], working_path=base_path)
cython(['_skeletonize_cy.pyx'], working_path=base_path)
cython(['_convex_hull.pyx'], working_path=base_path)
cython(['_greyreconstruct.pyx'], working_path=base_path)
config.add_extension('cmorph', sources=['cmorph.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershed', sources=['_watershed.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_cy', sources=['_skeletonize_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_convex_hull', sources=['_convex_hull.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_greyreconstruct', sources=['_greyreconstruct.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("segmentation", parent_package, top_path)
cython(["_felzenszwalb_cy.pyx"], working_path=base_path)
config.add_extension("_felzenszwalb_cy", sources=["_felzenszwalb_cy.c"], include_dirs=[get_numpy_include_dirs()])
cython(["_quickshift_cy.pyx"], working_path=base_path)
config.add_extension("_quickshift_cy", sources=["_quickshift_cy.c"], include_dirs=[get_numpy_include_dirs()])
cython(["_slic.pyx"], working_path=base_path)
config.add_extension("_slic", sources=["_slic.c"], include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('exposure', parent_package, top_path)
config.add_data_dir('tests')
cython(['_unwrap_1d.pyx'], working_path=base_path)
cython(['_unwrap_2d.pyx'], working_path=base_path)
cython(['_unwrap_3d.pyx'], working_path=base_path)
config.add_extension('_unwrap_1d', sources=['_unwrap_1d.c'],
include_dirs=[get_numpy_include_dirs()])
unwrap_sources_2d = ['_unwrap_2d.c', 'unwrap_2d_ljmu.c']
config.add_extension('_unwrap_2d', sources=unwrap_sources_2d,
include_dirs=[get_numpy_include_dirs()])
unwrap_sources_3d = ['_unwrap_3d.c', 'unwrap_3d_ljmu.c']
config.add_extension('_unwrap_3d', sources=unwrap_sources_3d,
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('_LBP', parent_package, top_path)
#config.add_data_dir('tests')
cython(['src/lbp_bins.pyx'], working_path=base_path)
cython(['src/_lbp.pyx'], working_path=base_path)
cython(['src/_lbp_ang.pyx'], working_path=base_path)
cython(['src/_lbp_rad.pyx'], working_path=base_path)
cython(['src/_nilbp.pyx'], working_path=base_path)
cython(['src/_sp_neighbors.pyx'], working_path=base_path)
cython(['src/boundary.pyx'], working_path=base_path)
config.add_extension('lbp_bins',
sources=['src/lbp_bins.c'],
include_dirs=[get_numpy_include_dirs()])
#include_dirs=[get_numpy_include_dirs()])
config.add_extension('_lbp',
sources=['src/_lbp.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_lbp_ang',
sources=['src/_lbp_ang.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_lbp_rad',
sources=['src/_lbp_rad.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_nilbp',
sources=['src/_nilbp.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_sp_neighbors',
sources=['src/_sp_neighbors.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('boundary',
sources=['src/boundary.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('morphology', parent_package, top_path)
config.add_data_dir('tests')
cython(['_watershed.pyx'], working_path=base_path)
cython(['_watershedMod.pyx'], working_path=base_path)
cython(['_watershedModStop.pyx'], working_path=base_path)
cython(['_watershedModStopFast.pyx'], working_path=base_path)
cython(['_watershedSimpleVelocity.pyx'], working_path=base_path)
cython(['_watershedFlowLines.pyx'], working_path=base_path)
cython(['_watershedFlowLinesWithoutRegion.pyx'], working_path=base_path)
cython(['_skeletonize_cy.pyx'], working_path=base_path)
cython(['_convex_hull.pyx'], working_path=base_path)
cython(['_greyreconstruct.pyx'], working_path=base_path)
cython(['_skeletonize_3d_cy.pyx.in'], working_path=base_path)
config.add_extension('_watershed',
sources=['_watershed.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershedMod',
sources=['_watershedMod.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershedModStop',
sources=['_watershedModStop.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershedModStopFast',
sources=['_watershedModStopFast.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershedSimpleVelocity',
sources=['_watershedSimpleVelocity.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershedFlowLines',
sources=['_watershedFlowLines.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_watershedFlowLinesWithoutRegion',
sources=['_watershedFlowLinesWithoutRegion.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_cy',
sources=['_skeletonize_cy.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_convex_hull',
sources=['_convex_hull.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_greyreconstruct',
sources=['_greyreconstruct.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_skeletonize_3d_cy',
sources=['_skeletonize_3d_cy.c'],
include_dirs=[get_numpy_include_dirs()])
return config
import numpy as np
from skimage._build import cython
__version__ = '0.1.2'
if sys.argv[-1] == 'release':
commands = [
'python setup.py sdist upload',
'git tag v{0}'.format(__version__),
'git push origin master --tag',
]
for cmd in commands:
subprocess.call(cmd, shell=True)
sys.exit(0)
cython(['_geometry.pyx'], working_path='pascal3d/utils')
ext_modules = [
distutils.extension.Extension(
'pascal3d.utils._geometry',
sources=['pascal3d/utils/_geometry.c'],
include_dirs=[np.get_include()],
),
]
setup(
name='pascal3d',
version=__version__,
packages=find_packages(),
author='Kentaro Wada',
author_email='*****@*****.**',
license='MIT',
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('filter', parent_package, top_path)
config.add_data_dir('tests')
cython(['_ctmf.pyx'], working_path=base_path)
cython(['_denoise_cy.pyx'], working_path=base_path)
cython(['rank/_core8.pyx'], working_path=base_path)
cython(['rank/_core16.pyx'], working_path=base_path)
cython(['rank/_crank8.pyx'], working_path=base_path)
cython(['rank/_crank8_percentiles.pyx'], working_path=base_path)
cython(['rank/_crank16.pyx'], working_path=base_path)
cython(['rank/_crank16_percentiles.pyx'], working_path=base_path)
cython(['rank/_crank16_bilateral.pyx'], working_path=base_path)
cython(['rank/rank.pyx'], working_path=base_path)
cython(['rank/percentile_rank.pyx'], working_path=base_path)
cython(['rank/bilateral_rank.pyx'], working_path=base_path)
config.add_extension('_ctmf', sources=['_ctmf.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_denoise_cy', sources=['_denoise_cy.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('rank/_core8', sources=['rank/_core8.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank/_core16', sources=['rank/_core16.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank/_crank8', sources=['rank/_crank8.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank/_crank8_percentiles', sources=['rank/_crank8_percentiles.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank/_crank16', sources=['rank/_crank16.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank/_crank16_percentiles', sources=['rank/_crank16_percentiles.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank/_crank16_bilateral', sources=['rank/_crank16_bilateral.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank/rank', sources=['rank/rank.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank/percentile_rank', sources=['rank/percentile_rank.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension(
'rank/bilateral_rank', sources=['rank/bilateral_rank.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('filter', parent_package, top_path)
config.add_data_dir('tests')
cython(['_ctmf.pyx'], working_path=base_path)
cython(['_denoise_cy.pyx'], working_path=base_path)
cython(['rank/_core8.pyx'], working_path=base_path)
cython(['rank/_core16.pyx'], working_path=base_path)
cython(['rank/_crank8.pyx'], working_path=base_path)
cython(['rank/_crank8_percentiles.pyx'], working_path=base_path)
cython(['rank/_crank16.pyx'], working_path=base_path)
cython(['rank/_crank16_percentiles.pyx'], working_path=base_path)
cython(['rank/_crank16_bilateral.pyx'], working_path=base_path)
cython(['rank/percentile_rank.pyx'], working_path=base_path)
cython(['rank/bilateral_rank.pyx'], working_path=base_path)
config.add_extension('_ctmf',
sources=['_ctmf.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_denoise_cy',
sources=['_denoise_cy.c'],
include_dirs=[get_numpy_include_dirs(), '../_shared'])
config.add_extension('rank._core8',
sources=['rank/_core8.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank._core16',
sources=['rank/_core16.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank._crank8',
sources=['rank/_crank8.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank._crank8_percentiles',
sources=['rank/_crank8_percentiles.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank._crank16',
sources=['rank/_crank16.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank._crank16_percentiles',
sources=['rank/_crank16_percentiles.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank._crank16_bilateral',
sources=['rank/_crank16_bilateral.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.percentile_rank',
sources=['rank/percentile_rank.c'],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('rank.bilateral_rank',
sources=['rank/bilateral_rank.c'],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package="", top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration("measure", parent_package, top_path)
config.add_data_dir("tests")
cython(["_ccomp.pyx"], working_path=base_path)
cython(["_find_contours_cy.pyx"], working_path=base_path)
cython(["_moments_cy.pyx"], working_path=base_path)
cython(["_marching_cubes_classic_cy.pyx"], working_path=base_path)
cython(["_marching_cubes_lewiner_cy.pyx"], working_path=base_path)
cython(["_pnpoly.pyx"], working_path=base_path)
config.add_extension("_ccomp", sources=["_ccomp.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension("_find_contours_cy", sources=["_find_contours_cy.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension("_moments_cy", sources=["_moments_cy.c"], include_dirs=[get_numpy_include_dirs()])
config.add_extension(
"_marching_cubes_classic_cy", sources=["_marching_cubes_classic_cy.c"], include_dirs=[get_numpy_include_dirs()]
)
config.add_extension(
"_marching_cubes_lewiner_cy", sources=["_marching_cubes_lewiner_cy.c"], include_dirs=[get_numpy_include_dirs()]
)
config.add_extension("_pnpoly", sources=["_pnpoly.c"], include_dirs=[get_numpy_include_dirs(), "../_shared"])
return config
