def main():
global DEBUG_MODE
input_ = sys.argv[1]
if len(sys.argv) > 2:
DEBUG_MODE=True
(intervalq,idq,rangeq,sampleq) = snaptron.process_params(input_)
#only care about sampleq
if len(intervalq) > 0 or len(rangeq['rfilter']) > 0 or snapconf.SNAPTRON_ID_PATT.search(input_):
sys.stderr.write("bad input asking for intervals and/or ranges, only take sample queries and/or sample ids, exiting\n")
sys.exit(-1)
sample_map = load_sample_metadata(snapconf.SAMPLE_MD_FILE)
if DEBUG_MODE:
sys.stderr.write("loaded %d samples metadata\n" % (len(sample_map)))
snaptron_ids = set()
#we're just streaming back sample metadata
query_samples(sampleq,sample_map,snaptron_ids,stream_sample_metadata=True)
def main():
global DEBUG_MODE
input_ = sys.argv[1]
if len(sys.argv) > 2:
DEBUG_MODE=True
(intervalq,rangeq,sampleq,idq) = (None,None,None,None)
ra = snaptron.default_region_args
sys.stderr.write("INPUT_ %s\n" % input_)
if input_[0] == '[' or input_[1] == '[' or input_[2] == '[':
(or_intervals,or_ranges,or_samples,or_ids,ra) = snaptron.process_post_params(input_)
(intervalq,rangeq,sampleq,idq) = (or_intervals[0],or_ranges[0],or_samples[0],or_ids[0])
else:
#just stream back the whole sample metadata file
if 'all=1' in input_:
#sample_map = load_sample_metadata(snapconf.SAMPLE_MD_FILE)
cmd = 'cat'
if '.gz' in snapconf.SAMPLE_MD_FILE:
cmd = 'zcat'
subp = subprocess.Popen('%s %s' % (cmd,snapconf.SAMPLE_MD_FILE),shell=True,stdin=None,stdout=sys.stdout,stderr=sys.stderr)
subp.wait()
return
#update support simple '&' CGI format
(intervalq,idq,rangeq,sampleq,ra) = snaptron.process_params(input_)
#only care about sampleq
if len(intervalq) > 0 or len(rangeq['rfilter']) > 0 or snapconf.SNAPTRON_ID_PATT.search(input_):
sys.stderr.write("bad input asking for intervals and/or ranges, only take sample queries and/or sample ids, exiting\n")
sys.exit(-1)
sample_map = load_sample_metadata(snapconf.SAMPLE_MD_FILE)
if DEBUG_MODE:
sys.stderr.write("loaded %d samples metadata\n" % (len(sample_map)))
#main decision cases
if len(idq) > 0:
query_by_sample_ids(idq,sample_map,ra)
elif len(sampleq) > 0:
snaptron_ids = set()
#we're just streaming back sample metadata
query_samples(sampleq,sample_map,snaptron_ids,ra,stream_sample_metadata=True)
def main():
global DEBUG_MODE
input_ = sys.argv[1]
if len(sys.argv) > 2:
DEBUG_MODE=True
(intervalq,rangeq,sampleq,idq) = (None,None,None,None)
ra = snaptron.default_region_args
sys.stderr.write("INPUT_ %s\n" % input_)
if input_[0] == '[' or input_[1] == '[' or input_[2] == '[':
(or_intervals,or_ranges,or_samples,or_ids,ra) = snaptron.process_post_params(input_)
(intervalq,rangeq,sampleq,idq) = (or_intervals[0],or_ranges[0],or_samples[0],or_ids[0])
else:
#just stream back the whole sample metadata file
if 'all=1' in input_:
#sample_map = load_sample_metadata(snapconf.SAMPLE_MD_FILE)
cmd = 'cat'
if '.gz' in snapconf.SAMPLE_MD_FILE:
cmd = 'zcat'
subp = subprocess.Popen('%s %s' % (cmd,snapconf.SAMPLE_MD_FILE),shell=True,stdin=None,stdout=sys.stdout,stderr=sys.stderr)
subp.wait()
return
#update support simple '&' CGI format
(intervalq,idq,rangeq,sampleq,ra) = snaptron.process_params(input_)
#only care about sampleq
if len(intervalq) > 0 or len(rangeq['rfilter']) > 0 or snapconf.SNAPTRON_ID_PATT.search(input_):
sys.stderr.write("bad input asking for intervals and/or ranges, only take sample queries and/or sample ids, exiting\n")
sys.exit(-1)
sample_map = load_sample_metadata(snapconf.SAMPLE_MD_FILE)
if DEBUG_MODE:
sys.stderr.write("loaded %d samples metadata\n" % (len(sample_map)))
#main decision cases
if len(idq) > 0:
query_by_sample_ids(idq,sample_map,ra)
elif len(sampleq) > 0:
snaptron_ids = set()
#we're just streaming back sample metadata
query_samples(sampleq,sample_map,snaptron_ids,ra,stream_sample_metadata=True)
