Exemplos de export_realdata_h5 em Python

Exemplo n.º 1

Arquivo: Listings_0_test_sparse_repreentation.py Projeto: MiroDur/Multiple-Scattering_Tensorflow

plt.subplot(144), plt.imshow(np.sum(np.abs(np.fft.fftshift(np.fft.fftn(myfwd))**.2),0)), plt.colorbar(), plt.show()    

plt.figure()    
plt.subplot(231), plt.title('ABS XZ'),plt.imshow(np.abs(myfwd)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(232), plt.title('ABS YZ'),plt.imshow(np.abs(myfwd)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(233), plt.title('ABS XY'),plt.imshow(np.abs(myfwd)[centerslice ,:,:]), plt.colorbar()# plt.show()
#myfwd=myfwd*np.exp(1j*2)
plt.subplot(234), plt.title('Angle XZ'),plt.imshow(np.angle(myfwd)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(235), plt.title('Angle YZ'),plt.imshow(np.angle(myfwd)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(236), plt.title('Angle XY'),plt.imshow(np.angle(myfwd)[centerslice ,:,:]), plt.colorbar(), plt.show()

plt.figure()    
plt.subplot(231), plt.title('muscat.obj Real XZ'),plt.imshow(np.real(muscat.obj)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(232), plt.title('muscat.obj Real XZ'),plt.imshow(np.real(muscat.obj)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(233), plt.title('muscat.obj Real XY'),plt.imshow(np.real(muscat.obj)[myfwd.shape[0]//2,:,:]), plt.colorbar()#, plt.show()
plt.subplot(234), plt.title('muscat.obj Imag XZ'),plt.imshow(np.imag(muscat.obj)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(235), plt.title('muscat.obj Imag XZ'),plt.imshow(np.imag(muscat.obj)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(236), plt.title('muscat.obj Imag XY'),plt.imshow(np.imag(muscat.obj)[myfwd.shape[0]//2,:,:]), plt.colorbar(), plt.show()

plt.figure()
plt.subplot(231), plt.imshow(np.fft.fftshift(np.angle(sess.run(muscat.TF_Po_aberr))))
plt.subplot(232), plt.imshow((((muscat.Ic))))

#%% save the results
np.save(savepath+'allAmp_simu.npy', myfwd)
data.export_realdata_h5(filename = './Data/DROPLETS/allAmp_simu.mat', matname = 'allAmp_red', data=myfwd)
data.export_realdata_h5(filename = './Data/DROPLETS/mySample.mat', matname = 'mySample', data=np.real(muscat.obj))


#%% Get memory utilization

Exemplo n.º 2

Arquivo: Listings_7_Optimize_Zernike_Simulated_Data.py Projeto: MiroDur/Multiple-Scattering_Tensorflow

if(is_display): 
    plt.subplot(131), plt.title('Ic'), plt.imshow(muscat.Ic)
    plt.subplot(132), plt.title('Po'),plt.imshow(np.fft.fftshift(np.abs(muscat.Po))), plt.colorbar()
    plt.subplot(133), plt.title('Po'),plt.imshow(np.fft.fftshift(np.angle(muscat.Po))), plt.colorbar(), plt.show()

#%% Display the results
''' Evaluate the model '''
sess = tf.Session()
sess.run(tf.global_variables_initializer())
myfwd, my_res = sess.run([tf_fwd, muscat.TF_obj])

if(is_display): plt.imshow(np.abs(np.fft.fftshift(np.fft.fftn(myfwd))**.2)[:,muscat.mysize[1]//2,:]), plt.colorbar(), plt.show()
if(is_display): plt.imshow(np.abs(np.fft.fftshift(np.fft.fftn(myfwd))**.2)[muscat.mysize[0]//2,:,:]), plt.colorbar(), plt.show()    
if(is_display): plt.imshow(np.abs(np.fft.fftshift(np.fft.fftn(myfwd))**.2)[:,:,muscat.mysize[2]//2]), plt.colorbar(), plt.show()    


if(is_display): plt.subplot(231), plt.title('ABS XZ'),plt.imshow(np.abs(myfwd)[:,muscat.mysize[1]//2,:]), plt.colorbar()#, plt.show()
if(is_display): plt.subplot(232), plt.title('ABS XZ'),plt.imshow(np.abs(myfwd)[:,:,muscat.mysize[2]//2]), plt.colorbar()#, plt.show()
if(is_display): plt.subplot(233), plt.title('ABS XY'),plt.imshow(np.abs(myfwd)[muscat.mysize[0]//2,:,:]), plt.colorbar()#, plt.show()

if(is_display): plt.subplot(234), plt.title('Angle XZ'),plt.imshow(np.angle(myfwd)[:,muscat.mysize[1]//2,:]), plt.colorbar()#, plt.show()
if(is_display): plt.subplot(235), plt.title('Angle XZ'),plt.imshow(np.angle(myfwd)[:,:,muscat.mysize[2]//2]), plt.colorbar()#, plt.show()
if(is_display): plt.subplot(236), plt.title('Angle XY'),plt.imshow(np.angle(myfwd)[muscat.mysize[0]//2,:,:]), plt.colorbar(), plt.show()


#%% save the results
np.save(savepath+'/rec.npy', myfwd)

data.export_realdata_h5(filename = './Data/DROPLETS/allAmp_simu.mat', matname = 'allAmp_red', data=my_res)

Exemplo n.º 3

Arquivo: Listings_9_fwd_born_ms_hybrid.py Projeto: MiroDur/Multiple-Scattering_Tensorflow

    plt.subplot(233), plt.title('real XZ'), plt.imshow(np.real(((muscat.myATF))**.2)[centerslice,:,:]), plt.colorbar()#, plt.show()    
    plt.subplot(232), plt.title('real XZ'), plt.imshow(np.real(((muscat.myATF))**.2)[:,:,muscat.myASF.shape[2]//2]), plt.colorbar()#
    plt.subplot(234), plt.title('imag XZ'), plt.imshow(np.imag(((muscat.myATF))**.2)[:,muscat.myASF.shape[1]//2,:]), plt.colorbar()#, plt.show()
    plt.subplot(236), plt.title('imag XZ'), plt.imshow(np.imag(((muscat.myATF))**.2)[centerslice,:,:]), plt.colorbar()#, plt.show()    
    plt.subplot(235), plt.title('imag XZ'), plt.imshow(np.imag(((muscat.myATF))**.2)[:,:,muscat.myASF.shape[2]//2]), plt.colorbar(), plt.show()    

#%
plt.figure()    
plt.subplot(231), plt.title('real XZ'),plt.imshow(np.real(myfwd)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(232), plt.title('real YZ'),plt.imshow(np.real(myfwd)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(233), plt.title('real XY'),plt.imshow(np.real(myfwd)[centerslice,:,:]), plt.colorbar()# plt.show()
plt.subplot(234), plt.title('imag XZ'),plt.imshow(np.imag(myfwd)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(235), plt.title('imag YZ'),plt.imshow(np.imag(myfwd)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(236), plt.title('imag XY'),plt.imshow(np.imag(myfwd)[centerslice,:,:]), plt.colorbar()
plt.savefig('real_imag.png')
plt.show()
#%
plt.subplot(231), plt.title('abs XZ'),plt.imshow(np.abs(myfwd)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(232), plt.title('abs YZ'),plt.imshow(np.abs(myfwd)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(233), plt.title('abs XY'),plt.imshow(np.abs(myfwd)[centerslice,:,:]), plt.colorbar()# plt.show()
plt.subplot(234), plt.title('angle XZ'),plt.imshow(np.angle(myfwd)[:,myfwd.shape[1]//2,:]), plt.colorbar()#, plt.show()
plt.subplot(235), plt.title('angle YZ'),plt.imshow(np.angle(myfwd)[:,:,myfwd.shape[2]//2]), plt.colorbar()#, plt.show()
plt.subplot(236), plt.title('angle XY'),plt.imshow(np.angle(myfwd)[centerslice,:,:]), plt.colorbar()#, plt.show()
plt.savefig('abs_phase.png')
plt.show()

#%% save the resultsl
#np.save(savepath+'allAmp_simu.npy', myfwd)
#data.export_realdata_h5(filename = './Data/DROPLETS/allAmp_simu.mat', matname = 'allAmp_red', data=myfwd)
data.export_realdata_h5(filename = './mySample_real.mat', matname = 'mySample', data=np.real(myfwd))
data.export_realdata_h5(filename = './mySample_imag.mat', matname = 'mySample', data=np.imag(myfwd))