def __init__(self, cellmap_df, normalizedsource_df, projectpath, paramlist, type, normalize = True ,plot=False, log=False):
self.cellmap_df = cellmap_df
self.source_df = normalizedsource_df
self.projectpath = projectpath
self.paramlist = paramlist
if type not in ['euclidean','cityblock', 'correlation', 'chebyshev', 'cosine', 'canberra', 'braycurtis', 'mahalanobis']:
raise Exception('Unknown mapping type: %s' % type)
else:
self.trainingtype = type
if plot:
self.plot = True
self.draw_func = draw.draw()
self.drawingdir = os.path.join(projectpath, 'mapcountour')
if not os.path.exists(self.drawingdir):
os.mkdir(self.drawingdir)
else:
self.plot = False
self.normalize = normalize
if normalize is True:
self.dfutil_func = dfutil.dfutil()
if log:
self.log = log
else:
self.log = False
def __init__(self, samplevec_df, cellmap_df, radius_list, learningconstant_list, paramlist,project_dir, normalize=True, log=False,
plot=False,cpucount=-1, type = 'cossim', logcycle = False):
self.irr_list = range(len(radius_list))
self.samplevec_df = samplevec_df
self.cellmap_df = cellmap_df
self.radius_list = radius_list
self.learningconst_list = learningconstant_list
self.log = log
self.draw_func = draw.draw()
self.project_dir = project_dir
self.normalize = normalize
if normalize is True:
self.dfutil_func = dfutil.dfutil()
if type not in ['euclidean','cityblock', 'correlation', 'chebyshev', 'cosine', 'canberra', 'braycurtis', 'mahalanobis']:
raise Exception('Unknown training type: %s' % type)
else:
self.traintype = type
if cpucount == -1:
self.cpucount = multiprocessing.cpu_count()-1
elif cpucount == 1:
raise Exception('Single core processing is not implemented yet')
else:
self.cpucount = cpucount-1
self.param_list = paramlist
if not logcycle is False:
if isinstance(logcycle, int):
self.logcylce = logcycle
else:
raise Exception('ERROR: logcycle should be int')
if plot is True:
self.plot = True
pertubplotdir = os.path.join(self.project_dir, 'mappertub')
if os.path.exists(pertubplotdir):
raise IOError('ERROR: Plot directory already exist:%s' % pertubplotdir)
os.mkdir(pertubplotdir)
self.pertubplotdir = pertubplotdir
else: self.plot = False
