def post_script(args):
from src.utils import figures_utils as fu
from src.mmvt_addon import fMRI_panel as fmri
from src.utils import utils
subject_fol = op.join(su.get_mmvt_dir(), args.subject)
figures_fol = op.join(subject_fol, 'figures')
clusters_file_names, _, _ = fmri.get_clusters_files(subject_fol)
clusters_names = [
f for f in clusters_file_names if args.clusters_type in f
]
print('clusters_names: {}'.format(clusters_names))
fmri_files_minmax_fname = op.join(subject_fol, 'fmri',
'fmri_files_minmax_cm.pkl')
data_min, data_max, colors_map_name = utils.load(fmri_files_minmax_fname)
for clusters_name, inflated, background_color in product(
clusters_names, args.inflated, args.background_color):
print('Combing figures for {}, inflated: {}, background color: {}'.
format(clusters_name, inflated, background_color))
perspectives_image_fname = fu.combine_four_brain_perspectives(
figures_fol, inflated, args.dpi, background_color, clusters_name,
args.inflated_ratio, True, args.overwrite)
fu.combine_brain_with_color_bar(
data_max, data_min, perspectives_image_fname, colors_map_name,
args.overwrite, args.dpi, args.x_left_crop, args.x_right_crop,
args.y_top_crop, args.y_buttom_crop, args.w_fac, args.h_fac,
background_color)
def check_if_all_figures_were_rendered(args):
from src.utils import figures_utils as fu
from src.mmvt_addon import fMRI_panel as fmri
subject_fol = op.join(su.get_mmvt_dir(), args.subject)
figures_fol = op.join(subject_fol, 'figures')
clusters_file_names, _ = fmri.get_clusters_files(subject_fol)
clusters_names = [f for f in clusters_file_names if args.clusters_type in f]
render_figures = False
all_figures = []
for clusters_name, inflated, background_color in product(clusters_names, args.inflated, args.background_color):
figures_fnames = fu.get_brain_perspectives_figures(
figures_fol, inflated, background_color, clusters_name, args.inflated_ratio)
all_figures.extend(figures_fnames)
if any(not op.isfile(f) for f in figures_fnames):
render_figures = True
break
return render_figures
def post_script(args):
from src.utils import figures_utils as fu
from src.mmvt_addon import fMRI_panel as fmri
from src.utils import utils
subject_fol = op.join(su.get_mmvt_dir(), args.subject)
figures_fol = op.join(subject_fol, 'figures')
clusters_file_names, _ = fmri.get_clusters_files(subject_fol)
clusters_names = [f for f in clusters_file_names if args.clusters_type in f]
print('clusters_names: {}'.format(clusters_names))
fmri_files_minmax_fname = op.join(subject_fol, 'fmri', 'fmri_files_minmax_cm.pkl')
data_min, data_max, colors_map_name = utils.load(fmri_files_minmax_fname)
for clusters_name, inflated, background_color in product(clusters_names, args.inflated, args.background_color):
print('Combing figures for {}, inflated: {}, background color: {}'.format(
clusters_name, inflated, background_color))
perspectives_image_fname = fu.combine_four_brain_perspectives(
figures_fol, inflated, args.dpi, background_color,
clusters_name, args.inflated_ratio, True, args.overwrite)
fu.combine_brain_with_color_bar(
data_max, data_min, perspectives_image_fname, colors_map_name, args.overwrite, args.dpi,
args.x_left_crop, args.x_right_crop, args.y_top_crop, args.y_buttom_crop,
args.w_fac, args.h_fac, background_color)
def check_if_all_figures_were_rendered(args):
from src.utils import figures_utils as fu
from src.mmvt_addon import fMRI_panel as fmri
subject_fol = op.join(su.get_mmvt_dir(), args.subject)
figures_fol = op.join(subject_fol, 'figures')
clusters_file_names, _, _ = fmri.get_clusters_files(subject_fol)
clusters_names = [
f for f in clusters_file_names if args.clusters_type in f
]
render_figures = False
all_figures = []
for clusters_name, inflated, background_color in product(
clusters_names, args.inflated, args.background_color):
figures_fnames = fu.get_brain_perspectives_figures(
figures_fol, inflated, background_color, clusters_name,
args.inflated_ratio)
all_figures.extend(figures_fnames)
if any(not op.isfile(f) for f in figures_fnames):
render_figures = True
break
return render_figures
