def parse_mac_to_geom(config_file):
config = load_config(config_file)
execute = 'castor-GATEMacToGeom'
cmd = execute
cmd = _append_str(cmd, '-m', config['macro_file'])
cmd = _append_str(cmd, '-o', config['output'])
return cmd
def parse_root_to_castor(config_file):
config = load_config(config_file)
execute = 'castor-GATERootToCastor'
cmd = execute
c = config['input']
if c['list'] is not None:
cmd = _append_str(cmd, '-il', c['list'])
elif c['file'] is not None:
cmd = _append_str(cmd, '-i', c['file'])
else:
raise ValueError('No input root data file(s) for this convertion!')
cmd = _append_str(cmd, '-o', config['output'])
cmd = _append_str(cmd, '-m', config['macro_file'])
cmd = _append_str(cmd, '-s', config['scanner_alias'])
return cmd
def parse_recon(config_file):
config = load_config(config_file)
execute = 'castor-recon'
cmd = execute
cmd = _append_str(cmd, '-df', config['datafile'])
cmd = _append_str(cmd, '-opti', config['optimization'])
i = config['iteration']
iter_str = str(i['nb_iter']) + ':' + str(i['subsets'])
cmd = _append_str(cmd, '-it', iter_str)
cmd = _append_str(cmd, '-proj', config['projector'])
if config['convolution'] is not None:
c = config['convolution']
conv_str = c['filter'] + ',' + _append_list(c['size']) + '::psf'
cmd = _append_str(cmd, '-conv', conv_str)
cmd = _append_str(cmd, '-dim', _append_list(config['dimension']))
cmd = _append_str(cmd, '-vox', _append_list(config['voxel_size']))
cmd = _append_str(cmd, '-dout', config['data_out'])
return cmd
def parse_listmode_to_castor(config_file):
return load_config(config_file)
def geo2mac(config: dict):
from srf.external.castor.io import load_config
make_mac(load_config(config))