def test_read_embedding_file_inside_archive(self):
token2vec = {
"think": torch.Tensor([0.143, 0.189, 0.555, 0.361, 0.472]),
"make": torch.Tensor([0.878, 0.651, 0.044, 0.264, 0.872]),
"difference": torch.Tensor([0.053, 0.162, 0.671, 0.110, 0.259]),
"àèìòù": torch.Tensor([1.0, 2.0, 3.0, 4.0, 5.0])
}
vocab = Vocabulary()
for token in token2vec:
vocab.add_token_to_namespace(token)
params = Params({
'pretrained_file':
str(self.FIXTURES_ROOT / 'embeddings/multi-file-archive.zip'),
'embedding_dim':
5
})
with pytest.raises(
ValueError,
message=
"No ValueError when pretrained_file is a multi-file archive"):
Embedding.from_params(vocab, params)
for ext in ['.zip', '.tar.gz']:
archive_path = str(
self.FIXTURES_ROOT / 'embeddings/multi-file-archive') + ext
file_uri = format_embeddings_file_uri(
archive_path, 'folder/fake_embeddings.5d.txt')
params = Params({'pretrained_file': file_uri, 'embedding_dim': 5})
embeddings = Embedding.from_params(vocab, params).weight.data
for tok, vec in token2vec.items():
i = vocab.get_token_index(tok)
assert torch.equal(embeddings[i],
vec), 'Problem with format ' + archive_path
def __init__(self,
input_dim: int,
combination: str = "x,y",
num_width_embeddings: int = None,
span_width_embedding_dim: int = None,
bucket_widths: bool = False,
use_exclusive_start_indices: bool = False) -> None:
super().__init__()
self._input_dim = input_dim
self._combination = combination
self._num_width_embeddings = num_width_embeddings
self._bucket_widths = bucket_widths
self._use_exclusive_start_indices = use_exclusive_start_indices
if use_exclusive_start_indices:
self._start_sentinel = Parameter(
torch.randn([1, 1, int(input_dim)]))
if num_width_embeddings is not None and span_width_embedding_dim is not None:
self._span_width_embedding = Embedding(num_width_embeddings,
span_width_embedding_dim)
elif not all(
[num_width_embeddings is None, span_width_embedding_dim is None]):
raise ConfigurationError(
"To use a span width embedding representation, you must"
"specify both num_width_buckets and span_width_embedding_dim.")
else:
self._span_width_embedding = None
def test_embedding_layer_actually_initializes_word_vectors_correctly(self):
vocab = Vocabulary()
vocab.add_token_to_namespace("word")
vocab.add_token_to_namespace("word2")
unicode_space = "\xa0\xa0\xa0\xa0\xa0\xa0\xa0\xa0"
vocab.add_token_to_namespace(unicode_space)
embeddings_filename = str(self.TEST_DIR / "embeddings.gz")
with gzip.open(embeddings_filename, 'wb') as embeddings_file:
embeddings_file.write("word 1.0 2.3 -1.0\n".encode('utf-8'))
embeddings_file.write(
f"{unicode_space} 3.4 3.3 5.0\n".encode('utf-8'))
params = Params({
'pretrained_file': embeddings_filename,
'embedding_dim': 3,
})
embedding_layer = Embedding.from_params(vocab, params)
word_vector = embedding_layer.weight.data[vocab.get_token_index(
"word")]
assert numpy.allclose(word_vector.numpy(),
numpy.array([1.0, 2.3, -1.0]))
word_vector = embedding_layer.weight.data[vocab.get_token_index(
unicode_space)]
assert numpy.allclose(word_vector.numpy(), numpy.array([3.4, 3.3,
5.0]))
word_vector = embedding_layer.weight.data[vocab.get_token_index(
"word2")]
assert not numpy.allclose(word_vector.numpy(),
numpy.array([1.0, 2.3, -1.0]))
def from_params(cls, vocab: Vocabulary, params: Params) -> 'TokenCharactersEncoder': # type: ignore
# pylint: disable=arguments-differ
embedding_params: Params = params.pop("embedding")
# Embedding.from_params() uses "tokens" as the default namespace, but we need to change
# that to be "token_characters" by default.
embedding_params.setdefault("vocab_namespace", "token_characters")
embedding = Embedding.from_params(vocab, embedding_params)
encoder_params: Params = params.pop("encoder")
encoder = Seq2VecEncoder.from_params(encoder_params)
dropout = params.pop_float("dropout", 0.0)
params.assert_empty(cls.__name__)
return cls(embedding, encoder, dropout)
def __init__(self,
input_dim: int,
forward_combination: str = "y-x",
backward_combination: str = "x-y",
num_width_embeddings: int = None,
span_width_embedding_dim: int = None,
bucket_widths: bool = False,
use_sentinels: bool = True) -> None:
super().__init__()
self._input_dim = input_dim
self._forward_combination = forward_combination
self._backward_combination = backward_combination
self._num_width_embeddings = num_width_embeddings
self._bucket_widths = bucket_widths
if self._input_dim % 2 != 0:
raise ConfigurationError(
"The input dimension is not divisible by 2, but the "
"BidirectionalEndpointSpanExtractor assumes the embedded representation "
"is bidirectional (and hence divisible by 2).")
if num_width_embeddings is not None and span_width_embedding_dim is not None:
self._span_width_embedding = Embedding(num_width_embeddings,
span_width_embedding_dim)
elif not all(
[num_width_embeddings is None, span_width_embedding_dim is None]):
raise ConfigurationError(
"To use a span width embedding representation, you must"
"specify both num_width_buckets and span_width_embedding_dim.")
else:
self._span_width_embedding = None
self._use_sentinels = use_sentinels
if use_sentinels:
self._start_sentinel = Parameter(
torch.randn([1, 1, int(input_dim / 2)]))
self._end_sentinel = Parameter(
torch.randn([1, 1, int(input_dim / 2)]))
def test_get_embedding_layer_initializes_unseen_words_randomly_not_zero(
self):
vocab = Vocabulary()
vocab.add_token_to_namespace("word")
vocab.add_token_to_namespace("word2")
embeddings_filename = str(self.TEST_DIR / "embeddings.gz")
with gzip.open(embeddings_filename, 'wb') as embeddings_file:
embeddings_file.write("word 1.0 2.3 -1.0\n".encode('utf-8'))
params = Params({
'pretrained_file': embeddings_filename,
'embedding_dim': 3,
})
embedding_layer = Embedding.from_params(vocab, params)
word_vector = embedding_layer.weight.data[vocab.get_token_index(
"word2")]
assert not numpy.allclose(word_vector.numpy(),
numpy.array([0.0, 0.0, 0.0]))
def test_read_hdf5_raises_on_invalid_shape(self):
vocab = Vocabulary()
vocab.add_token_to_namespace("word")
embeddings_filename = str(self.TEST_DIR / "embeddings.hdf5")
embeddings = numpy.random.rand(vocab.get_vocab_size(), 10)
with h5py.File(embeddings_filename, 'w') as fout:
_ = fout.create_dataset('embedding',
embeddings.shape,
dtype='float32',
data=embeddings)
params = Params({
'pretrained_file': embeddings_filename,
'embedding_dim': 5,
})
with pytest.raises(ConfigurationError):
_ = Embedding.from_params(vocab, params)
def test_read_hdf5_format_file(self):
vocab = Vocabulary()
vocab.add_token_to_namespace("word")
vocab.add_token_to_namespace("word2")
embeddings_filename = str(self.TEST_DIR / "embeddings.hdf5")
embeddings = numpy.random.rand(vocab.get_vocab_size(), 5)
with h5py.File(embeddings_filename, 'w') as fout:
_ = fout.create_dataset('embedding',
embeddings.shape,
dtype='float32',
data=embeddings)
params = Params({
'pretrained_file': embeddings_filename,
'embedding_dim': 5,
})
embedding_layer = Embedding.from_params(vocab, params)
assert numpy.allclose(embedding_layer.weight.data.numpy(), embeddings)
def test_forward_works_with_projection_layer(self):
vocab = Vocabulary()
vocab.add_token_to_namespace('the')
vocab.add_token_to_namespace('a')
params = Params({
'pretrained_file':
str(self.FIXTURES_ROOT / 'embeddings/glove.6B.300d.sample.txt.gz'),
'embedding_dim':
300,
'projection_dim':
20
})
embedding_layer = Embedding.from_params(vocab, params)
input_tensor = torch.LongTensor([[3, 2, 1, 0]])
embedded = embedding_layer(input_tensor).data.numpy()
assert embedded.shape == (1, 4, 20)
input_tensor = torch.LongTensor([[[3, 2, 1, 0]]])
embedded = embedding_layer(input_tensor).data.numpy()
assert embedded.shape == (1, 1, 4, 20)
class BidirectionalEndpointSpanExtractor(SpanExtractor):
"""
Represents spans from a bidirectional encoder as a concatenation of two different
representations of the span endpoints, one for the forward direction of the encoder
and one from the backward direction. This type of representation encodes some subtelty,
because when you consider the forward and backward directions separately, the end index
of the span for the backward direction's representation is actually the start index.
By default, this ``SpanExtractor`` represents spans as
``sequence_tensor[inclusive_span_end] - sequence_tensor[exclusive_span_start]``
meaning that the representation is the difference between the the last word in the span
and the word `before` the span started. Note that the start and end indices are with
respect to the direction that the RNN is going in, so for the backward direction, the
start/end indices are reversed.
Additionally, the width of the spans can be embedded and concatenated on to the
final combination.
The following other types of representation are supported for both the forward and backward
directions, assuming that ``x = span_start_embeddings`` and ``y = span_end_embeddings``.
``x``, ``y``, ``x*y``, ``x+y``, ``x-y``, ``x/y``, where each of those binary operations
is performed elementwise. You can list as many combinations as you want, comma separated.
For example, you might give ``x,y,x*y`` as the ``combination`` parameter to this class.
The computed similarity function would then be ``[x; y; x*y]``, which can then be optionally
concatenated with an embedded representation of the width of the span.
Parameters
----------
input_dim : ``int``, required.
The final dimension of the ``sequence_tensor``.
forward_combination : str, optional (default = "y-x").
The method used to combine the ``forward_start_embeddings`` and ``forward_end_embeddings``
for the forward direction of the bidirectional representation.
See above for a full description.
backward_combination : str, optional (default = "x-y").
The method used to combine the ``backward_start_embeddings`` and ``backward_end_embeddings``
for the backward direction of the bidirectional representation.
See above for a full description.
num_width_embeddings : ``int``, optional (default = None).
Specifies the number of buckets to use when representing
span width features.
span_width_embedding_dim : ``int``, optional (default = None).
The embedding size for the span_width features.
bucket_widths : ``bool``, optional (default = False).
Whether to bucket the span widths into log-space buckets. If ``False``,
the raw span widths are used.
use_sentinels : ``bool``, optional (default = ``True``).
If ``True``, sentinels are used to represent exclusive span indices for the elements
in the first and last positions in the sequence (as the exclusive indices for these
elements are outside of the the sequence boundary). This is not strictly necessary,
as you may know that your exclusive start and end indices are always within your sequence
representation, such as if you have appended/prepended <START> and <END> tokens to your
sequence.
"""
def __init__(self,
input_dim: int,
forward_combination: str = "y-x",
backward_combination: str = "x-y",
num_width_embeddings: int = None,
span_width_embedding_dim: int = None,
bucket_widths: bool = False,
use_sentinels: bool = True) -> None:
super().__init__()
self._input_dim = input_dim
self._forward_combination = forward_combination
self._backward_combination = backward_combination
self._num_width_embeddings = num_width_embeddings
self._bucket_widths = bucket_widths
if self._input_dim % 2 != 0:
raise ConfigurationError(
"The input dimension is not divisible by 2, but the "
"BidirectionalEndpointSpanExtractor assumes the embedded representation "
"is bidirectional (and hence divisible by 2).")
if num_width_embeddings is not None and span_width_embedding_dim is not None:
self._span_width_embedding = Embedding(num_width_embeddings,
span_width_embedding_dim)
elif not all(
[num_width_embeddings is None, span_width_embedding_dim is None]):
raise ConfigurationError(
"To use a span width embedding representation, you must"
"specify both num_width_buckets and span_width_embedding_dim.")
else:
self._span_width_embedding = None
self._use_sentinels = use_sentinels
if use_sentinels:
self._start_sentinel = Parameter(
torch.randn([1, 1, int(input_dim / 2)]))
self._end_sentinel = Parameter(
torch.randn([1, 1, int(input_dim / 2)]))
def get_input_dim(self) -> int:
return self._input_dim
def get_output_dim(self) -> int:
unidirectional_dim = int(self._input_dim / 2)
forward_combined_dim = util.get_combined_dim(
self._forward_combination,
[unidirectional_dim, unidirectional_dim])
backward_combined_dim = util.get_combined_dim(
self._backward_combination,
[unidirectional_dim, unidirectional_dim])
if self._span_width_embedding is not None:
return forward_combined_dim + backward_combined_dim + \
self._span_width_embedding.get_output_dim()
return forward_combined_dim + backward_combined_dim
@overrides
def forward(
self,
sequence_tensor: torch.FloatTensor,
span_indices: torch.LongTensor,
sequence_mask: torch.LongTensor = None,
span_indices_mask: torch.LongTensor = None) -> torch.FloatTensor:
# Both of shape (batch_size, sequence_length, embedding_size / 2)
forward_sequence, backward_sequence = sequence_tensor.split(int(
self._input_dim / 2),
dim=-1)
forward_sequence = forward_sequence.contiguous()
backward_sequence = backward_sequence.contiguous()
# shape (batch_size, num_spans)
span_starts, span_ends = [
index.squeeze(-1) for index in span_indices.split(1, dim=-1)
]
if span_indices_mask is not None:
span_starts = span_starts * span_indices_mask
span_ends = span_ends * span_indices_mask
# We want `exclusive` span starts, so we remove 1 from the forward span starts
# as the AllenNLP ``SpanField`` is inclusive.
# shape (batch_size, num_spans)
exclusive_span_starts = span_starts - 1
# shape (batch_size, num_spans, 1)
start_sentinel_mask = (
exclusive_span_starts == -1).long().unsqueeze(-1)
# We want `exclusive` span ends for the backward direction
# (so that the `start` of the span in that direction is exlusive), so
# we add 1 to the span ends as the AllenNLP ``SpanField`` is inclusive.
exclusive_span_ends = span_ends + 1
if sequence_mask is not None:
# shape (batch_size)
sequence_lengths = util.get_lengths_from_binary_sequence_mask(
sequence_mask)
else:
# shape (batch_size), filled with the sequence length size of the sequence_tensor.
sequence_lengths = (
torch.ones_like(sequence_tensor[:, 0, 0], dtype=torch.long) *
sequence_tensor.size(1))
# shape (batch_size, num_spans, 1)
end_sentinel_mask = (exclusive_span_ends == sequence_lengths.unsqueeze(
-1)).long().unsqueeze(-1)
# As we added 1 to the span_ends to make them exclusive, which might have caused indices
# equal to the sequence_length to become out of bounds, we multiply by the inverse of the
# end_sentinel mask to erase these indices (as we will replace them anyway in the block below).
# The same argument follows for the exclusive span start indices.
exclusive_span_ends = exclusive_span_ends * (
1 - end_sentinel_mask.squeeze(-1))
exclusive_span_starts = exclusive_span_starts * (
1 - start_sentinel_mask.squeeze(-1))
# We'll check the indices here at runtime, because it's difficult to debug
# if this goes wrong and it's tricky to get right.
if (exclusive_span_starts < 0).any() or (
exclusive_span_ends > sequence_lengths.unsqueeze(-1)).any():
raise ValueError(
f"Adjusted span indices must lie inside the length of the sequence tensor, "
f"but found: exclusive_span_starts: {exclusive_span_starts}, "
f"exclusive_span_ends: {exclusive_span_ends} for a sequence tensor with lengths "
f"{sequence_lengths}.")
# Forward Direction: start indices are exclusive. Shape (batch_size, num_spans, input_size / 2)
forward_start_embeddings = util.batched_index_select(
forward_sequence, exclusive_span_starts)
# Forward Direction: end indices are inclusive, so we can just use span_ends.
# Shape (batch_size, num_spans, input_size / 2)
forward_end_embeddings = util.batched_index_select(
forward_sequence, span_ends)
# Backward Direction: The backward start embeddings use the `forward` end
# indices, because we are going backwards.
# Shape (batch_size, num_spans, input_size / 2)
backward_start_embeddings = util.batched_index_select(
backward_sequence, exclusive_span_ends)
# Backward Direction: The backward end embeddings use the `forward` start
# indices, because we are going backwards.
# Shape (batch_size, num_spans, input_size / 2)
backward_end_embeddings = util.batched_index_select(
backward_sequence, span_starts)
if self._use_sentinels:
# If we're using sentinels, we need to replace all the elements which were
# outside the dimensions of the sequence_tensor with either the start sentinel,
# or the end sentinel.
float_end_sentinel_mask = end_sentinel_mask.float()
float_start_sentinel_mask = start_sentinel_mask.float()
forward_start_embeddings = forward_start_embeddings * (1 - float_start_sentinel_mask) \
+ float_start_sentinel_mask * self._start_sentinel
backward_start_embeddings = backward_start_embeddings * (1 - float_end_sentinel_mask) \
+ float_end_sentinel_mask * self._end_sentinel
# Now we combine the forward and backward spans in the manner specified by the
# respective combinations and concatenate these representations.
# Shape (batch_size, num_spans, forward_combination_dim)
forward_spans = util.combine_tensors(
self._forward_combination,
[forward_start_embeddings, forward_end_embeddings])
# Shape (batch_size, num_spans, backward_combination_dim)
backward_spans = util.combine_tensors(
self._backward_combination,
[backward_start_embeddings, backward_end_embeddings])
# Shape (batch_size, num_spans, forward_combination_dim + backward_combination_dim)
span_embeddings = torch.cat([forward_spans, backward_spans], -1)
if self._span_width_embedding is not None:
# Embed the span widths and concatenate to the rest of the representations.
if self._bucket_widths:
span_widths = util.bucket_values(
span_ends - span_starts,
num_total_buckets=self._num_width_embeddings)
else:
span_widths = span_ends - span_starts
span_width_embeddings = self._span_width_embedding(span_widths)
return torch.cat([span_embeddings, span_width_embeddings], -1)
if span_indices_mask is not None:
return span_embeddings * span_indices_mask.float().unsqueeze(-1)
return span_embeddings
class EndpointSpanExtractor(SpanExtractor):
"""
Represents spans as a combination of the embeddings of their endpoints. Additionally,
the width of the spans can be embedded and concatenated on to the final combination.
The following types of representation are supported, assuming that
``x = span_start_embeddings`` and ``y = span_end_embeddings``.
``x``, ``y``, ``x*y``, ``x+y``, ``x-y``, ``x/y``, where each of those binary operations
is performed elementwise. You can list as many combinations as you want, comma separated.
For example, you might give ``x,y,x*y`` as the ``combination`` parameter to this class.
The computed similarity function would then be ``[x; y; x*y]``, which can then be optionally
concatenated with an embedded representation of the width of the span.
Parameters
----------
input_dim : ``int``, required.
The final dimension of the ``sequence_tensor``.
combination : str, optional (default = "x,y").
The method used to combine the ``start_embedding`` and ``end_embedding``
representations. See above for a full description.
num_width_embeddings : ``int``, optional (default = None).
Specifies the number of buckets to use when representing
span width features.
span_width_embedding_dim : ``int``, optional (default = None).
The embedding size for the span_width features.
bucket_widths : ``bool``, optional (default = False).
Whether to bucket the span widths into log-space buckets. If ``False``,
the raw span widths are used.
use_exclusive_start_indices : ``bool``, optional (default = ``False``).
If ``True``, the start indices extracted are converted to exclusive indices. Sentinels
are used to represent exclusive span indices for the elements in the first
position in the sequence (as the exclusive indices for these elements are outside
of the the sequence boundary) so that start indices can be exclusive.
NOTE: This option can be helpful to avoid the pathological case in which you
want span differences for length 1 spans - if you use inclusive indices, you
will end up with an ``x - x`` operation for length 1 spans, which is not good.
"""
def __init__(self,
input_dim: int,
combination: str = "x,y",
num_width_embeddings: int = None,
span_width_embedding_dim: int = None,
bucket_widths: bool = False,
use_exclusive_start_indices: bool = False) -> None:
super().__init__()
self._input_dim = input_dim
self._combination = combination
self._num_width_embeddings = num_width_embeddings
self._bucket_widths = bucket_widths
self._use_exclusive_start_indices = use_exclusive_start_indices
if use_exclusive_start_indices:
self._start_sentinel = Parameter(
torch.randn([1, 1, int(input_dim)]))
if num_width_embeddings is not None and span_width_embedding_dim is not None:
self._span_width_embedding = Embedding(num_width_embeddings,
span_width_embedding_dim)
elif not all(
[num_width_embeddings is None, span_width_embedding_dim is None]):
raise ConfigurationError(
"To use a span width embedding representation, you must"
"specify both num_width_buckets and span_width_embedding_dim.")
else:
self._span_width_embedding = None
def get_input_dim(self) -> int:
return self._input_dim
def get_output_dim(self) -> int:
combined_dim = util.get_combined_dim(
self._combination, [self._input_dim, self._input_dim])
if self._span_width_embedding is not None:
return combined_dim + self._span_width_embedding.get_output_dim()
return combined_dim
@overrides
def forward(self,
sequence_tensor: torch.FloatTensor,
span_indices: torch.LongTensor,
sequence_mask: torch.LongTensor = None,
span_indices_mask: torch.LongTensor = None) -> None:
# shape (batch_size, num_spans)
span_starts, span_ends = [
index.squeeze(-1) for index in span_indices.split(1, dim=-1)
]
if span_indices_mask is not None:
# It's not strictly necessary to multiply the span indices by the mask here,
# but it's possible that the span representation was padded with something other
# than 0 (such as -1, which would be an invalid index), so we do so anyway to
# be safe.
span_starts = span_starts * span_indices_mask
span_ends = span_ends * span_indices_mask
if not self._use_exclusive_start_indices:
start_embeddings = util.batched_index_select(
sequence_tensor, span_starts)
end_embeddings = util.batched_index_select(sequence_tensor,
span_ends)
else:
# We want `exclusive` span starts, so we remove 1 from the forward span starts
# as the AllenNLP ``SpanField`` is inclusive.
# shape (batch_size, num_spans)
exclusive_span_starts = span_starts - 1
# shape (batch_size, num_spans, 1)
start_sentinel_mask = (
exclusive_span_starts == -1).long().unsqueeze(-1)
exclusive_span_starts = exclusive_span_starts * (
1 - start_sentinel_mask.squeeze(-1))
# We'll check the indices here at runtime, because it's difficult to debug
# if this goes wrong and it's tricky to get right.
if (exclusive_span_starts < 0).any():
raise ValueError(
f"Adjusted span indices must lie inside the the sequence tensor, "
f"but found: exclusive_span_starts: {exclusive_span_starts}."
)
start_embeddings = util.batched_index_select(
sequence_tensor, exclusive_span_starts)
end_embeddings = util.batched_index_select(sequence_tensor,
span_ends)
# We're using sentinels, so we need to replace all the elements which were
# outside the dimensions of the sequence_tensor with the start sentinel.
float_start_sentinel_mask = start_sentinel_mask.float()
start_embeddings = start_embeddings * (1 - float_start_sentinel_mask) \
+ float_start_sentinel_mask * self._start_sentinel
combined_tensors = util.combine_tensors(
self._combination, [start_embeddings, end_embeddings])
if self._span_width_embedding is not None:
# Embed the span widths and concatenate to the rest of the representations.
if self._bucket_widths:
span_widths = util.bucket_values(
span_ends - span_starts,
num_total_buckets=self._num_width_embeddings)
else:
span_widths = span_ends - span_starts
span_width_embeddings = self._span_width_embedding(span_widths)
return torch.cat([combined_tensors, span_width_embeddings], -1)
if span_indices_mask is not None:
return combined_tensors * span_indices_mask.unsqueeze(-1).float()
return combined_tensors