def get_path_to_root(entity_id):
"""
:param entity_id:
:return:
"""
if entity_id.startswith('CHEBI'):
ssm.semantic_base('bin/DiShIn/chebi.db')
if entity_id.startswith('HP'):
ssm.semantic_base('bin/DiShIn/hp.db')
if entity_id.startswith('GO'):
ssm.semantic_base('bin/DiShIn/go.db')
if entity_id.startswith('DOID'):
ssm.semantic_base('bin/DiShIn/doid.db')
e1 = ssm.get_id(entity_id.replace(':', '_'))
a = ssm.common_ancestors(e1, e1)
a = [ssm.get_name(x) for x in a]
return a
def get_common_ancestors(id1, id2):
"""
:param id1:
:param id2:
:return:
"""
if id1.startswith('CHEBI'):
ssm.semantic_base('bin/DiShIn/chebi.db')
if id1.startswith('HP'):
ssm.semantic_base('bin/DiShIn/hp.db')
if id1.startswith('GO'):
ssm.semantic_base('bin/DiShIn/go.db')
if id1.startswith('DOID'):
ssm.semantic_base('bin/DiShIn/doid.db')
e1 = ssm.get_id(id1.replace(':', '_'))
if id2.startswith('CHEBI'):
ssm.semantic_base('bin/DiShIn/chebi.db')
if id2.startswith('HP'):
ssm.semantic_base('bin/DiShIn/hp.db')
if id2.startswith('GO'):
ssm.semantic_base('bin/DiShIn/go.db')
if id2.startswith('DOID'):
ssm.semantic_base('bin/DiShIn/doid.db')
e2 = ssm.get_id(id2.replace(':', '_'))
a = ssm.common_ancestors(e1, e2)
# if a:
# print(id1, id2)
# print(e1, e2)
# print()
# print(a)
# b = [ssm.get_name(x) for x in a]
# print(b)
# print('\n\n\n')
a = [ssm.get_name(x) for x in a]
return a