class IVExperimentSerializer(serializers.ModelSerializer):
study = StudySerializer()
cell_type = IVCellTypeSerializer()
url = serializers.CharField(source='get_absolute_url', read_only=True)
metabolic_activation = serializers.CharField(
source='get_metabolic_activation_display', read_only=True)
class Meta:
model = models.IVExperiment
fields = '__all__'
depth = 1
class SingleResultSerializer(serializers.ModelSerializer):
study = StudySerializer()
meta_result = serializers.PrimaryKeyRelatedField(read_only=True)
def to_representation(self, instance):
ret = super().to_representation(instance)
ret['estimateFormatted'] = instance.estimate_formatted
return ret
class Meta:
model = models.SingleResult
fields = '__all__'
class SingleResultSerializer(serializers.ModelSerializer):
study = StudySerializer()
outcome_group = AssessedOutcomeGroupVerboseSerializer()
meta_result = serializers.PrimaryKeyRelatedField(read_only=True)
def to_representation(self, instance):
ret = super(SingleResultSerializer, self).to_representation(instance)
if instance.outcome_group is None:
ret['estimateFormatted'] = instance.estimate_formatted
return ret
class Meta:
model = models.SingleResult
class MetaProtocolSerializer(serializers.ModelSerializer):
study = StudySerializer()
inclusion_criteria = serializers.StringRelatedField(many=True)
exclusion_criteria = serializers.StringRelatedField(many=True)
url = serializers.ReadOnlyField(source="get_absolute_url")
protocol_type = serializers.ReadOnlyField(
source="get_protocol_type_display")
lit_search_strategy = serializers.ReadOnlyField(
source="get_lit_search_strategy_display")
results = MetaResultLinkSerializer(many=True)
class Meta:
model = models.MetaProtocol
fields = '__all__'
class ExperimentSerializer(serializers.ModelSerializer):
study = StudySerializer()
def to_representation(self, instance):
ret = super().to_representation(instance)
ret['url'] = instance.get_absolute_url()
ret['type'] = instance.get_type_display()
ret['is_generational'] = instance.is_generational()
ret['cas_url'] = instance.cas_url
return ret
class Meta:
model = models.Experiment
fields = '__all__'
class MetaProtocolSerializer(serializers.ModelSerializer):
study = StudySerializer()
inclusion_criteria = serializers.StringRelatedField(many=True)
exclusion_criteria = serializers.StringRelatedField(many=True)
def to_representation(self, instance):
ret = super(MetaProtocolSerializer, self).to_representation(instance)
ret['url'] = instance.get_absolute_url()
ret['protocol_type'] = instance.get_protocol_type_display()
ret['lit_search_strategy'] = instance.get_lit_search_strategy_display()
return ret
class Meta:
model = models.MetaProtocol
class StudyPopulationSerializer(serializers.ModelSerializer):
study = StudySerializer()
criteria = StudyPopulationCriteriaSerializer(source='spcriteria', many=True)
outcomes = OutcomeLinkSerializer(many=True)
exposures = ExposureLinkSerializer(many=True)
can_create_sets = serializers.BooleanField(read_only=True)
comparison_sets = ComparisonSetLinkSerializer(many=True)
country = serializers.CharField(source='country.name', read_only=True)
url = serializers.CharField(source='get_absolute_url', read_only=True)
design = serializers.CharField(source='get_design_display', read_only=True)
class Meta:
model = models.StudyPopulation
fields = '__all__'
class IVExperimentSerializer(serializers.ModelSerializer):
study = StudySerializer()
cell_type = IVCellTypeSerializer()
def to_representation(self, instance):
ret = super(IVExperimentSerializer, self).to_representation(instance)
ret['url'] = instance.get_absolute_url()
ret['metabolic_activation'] = instance.get_metabolic_activation_display(
)
ret['title'] = unicode(self.instance)
return ret
class Meta:
model = models.IVExperiment
depth = 1
class StudyPopulationSerializer(serializers.ModelSerializer):
study = StudySerializer()
ethnicity = serializers.StringRelatedField(many=True)
inclusion_criteria = serializers.StringRelatedField(many=True)
exclusion_criteria = serializers.StringRelatedField(many=True)
confounding_criteria = serializers.StringRelatedField(many=True)
def to_representation(self, instance):
ret = super(StudyPopulationSerializer, self).to_representation(instance)
ret['url'] = instance.get_absolute_url()
ret['design'] = instance.get_design_display()
ret['country'] = instance.get_country_display()
ret['sex'] = instance.get_sex_display()
ret['age_sd_type'] = instance.get_age_sd_type_display()
ret['age_mean_type'] = instance.get_age_mean_type_display()
ret['age_lower_type'] = instance.get_age_lower_type_display()
ret['age_upper_type'] = instance.get_age_upper_type_display()
return ret
class Meta:
model = models.StudyPopulation
class IVChemicalSerializer(_IVChemicalSerializer):
study = StudySerializer()
