def build_from_data(self, X, f, df=None, avdim=None):
X, f, M, m = process_inputs_outputs(X, f)
self.X, self.f, self.m = X, f, m
# if gradients aren't available, estimate them from data
if df is None:
df = local_linear_gradients(X, f)
# compute the active subspace
ss = Subspaces()
ss.compute(df)
if avdim is not None:
ss.partition(avdim)
self.n = ss.W1.shape[1]
print 'Dimension of subspace is {:d}'.format(self.n)
# set up the active variable domain and map
if self.bndflag:
avdom = BoundedActiveVariableDomain(ss)
avmap = BoundedActiveVariableMap(avdom)
else:
avdom = UnboundedActiveVariableDomain(ss)
avmap = UnboundedActiveVariableMap(avdom)
# build the response surface
avrs = ActiveSubspaceResponseSurface(avmap)
avrs.train_with_data(X, f)
self.av_respsurf = avrs
def build_from_interface(self, m, fun, dfun=None, avdim=None):
self.m = m
# number of gradient samples
M = int(np.floor(6*(m+1)*np.log(m)))
# sample points for gradients
if self.bndflag:
X = np.random.uniform(-1.0, 1.0, size=(M, m))
else:
X = np.random.normal(size=(M, m))
funr = SimulationRunner(fun)
f = funr.run(X)
self.X, self.f, self.funr = X, f, funr
# sample the simulation's gradients
if dfun == None:
df = finite_difference_gradients(X, fun)
else:
dfunr = SimulationGradientRunner(dfun)
df = dfunr.run(X)
self.dfunr = dfunr
# compute the active subspace
ss = Subspaces()
ss.compute(df)
if avdim is not None:
ss.partition(avdim)
self.n = ss.W1.shape[1]
print 'Dimension of subspace is {:d}'.format(self.n)
# set up the active variable domain and map
if self.bndflag:
avdom = BoundedActiveVariableDomain(ss)
avmap = BoundedActiveVariableMap(avdom)
else:
avdom = UnboundedActiveVariableDomain(ss)
avmap = UnboundedActiveVariableMap(avdom)
# build the response surface
avrs = ActiveSubspaceResponseSurface(avmap)
avrs.train_with_interface(fun, int(np.power(5,self.n)))
self.av_respsurf = avrs
def build_from_data(self, X, f, df=None, avdim=None):
"""
Build the active subspace-enabled model with input/output pairs.
:param ndarray X: M-by-m matrix with evaluations of the m-dimensional
simulation inputs.
:param ndarray f: M-by-1 matrix with corresponding simulation quantities
of interest.
:param ndarray df: M-by-m matrix that contains the gradients of the
simulation quantity of interest, oriented row-wise, that correspond
to the rows of `X`. If `df` is not present, then it is estimated
with crude local linear models using the pairs `X` and `f`.
:param int avdim: The dimension of the active subspace. If `avdim`
is not present, a crude heuristic is used to choose an active
subspace dimension based on the given data `X` and
`f`---and possible `df`.
**Notes**
This method follows these steps:
#. If `df` is None, estimate it with local linear models using the \
input/output pairs `X` and `f`.
#. Compute the active and inactive subspaces using `df`.
#. Train a response surface using `X` and `f` that exploits the active \
subspace.
"""
X, f, M, m = process_inputs_outputs(X, f)
# check if the given inputs satisfy the assumptions
if self.bounded_inputs:
if np.any(X) > 1.0 or np.any(X) < -1.0:
raise Exception('The supposedly bounded inputs exceed the \
bounds [-1,1].')
else:
if np.any(X) > 10.0 or np.any(X) < -10.0:
raise Exception('There is a very good chance that your \
unbounded inputs are not properly scaled.')
self.X, self.f, self.m = X, f, m
if df is not None:
df, M_df, m_df = process_inputs(df)
if m_df != m:
raise ValueError('The dimension of the gradients should be \
the same as the dimension of the inputs.')
else:
# if gradients aren't available, estimate them from data
df = local_linear_gradients(X, f)
# compute the active subspace
ss = Subspaces()
ss.compute(df)
if avdim is not None:
if not isinstance(avdim, int):
raise TypeError('avdim should be an integer.')
else:
ss.partition(avdim)
self.n = ss.W1.shape[1]
print 'The dimension of the active subspace is {:d}.'.format(self.n)
# set up the active variable domain and map
if self.bounded_inputs:
avdom = BoundedActiveVariableDomain(ss)
avmap = BoundedActiveVariableMap(avdom)
else:
avdom = UnboundedActiveVariableDomain(ss)
avmap = UnboundedActiveVariableMap(avdom)
# build the response surface
asrs = ActiveSubspaceResponseSurface(avmap)
asrs.train_with_data(X, f)
# set the R-squared coefficient
self.Rsqr = asrs.respsurf.Rsqr
self.as_respsurf = asrs
def build_from_interface(self, fun, dfun=None, avdim=None):
"""
Build the active subspace-enabled model with interfaces to the
simulation.
:param function fun: A function that interfaces with the simulation.
It should take an ndarray of shape 1-by-m (e.g., a row of `X`), and
it should return a scalar. That scalar is the quantity of interest from the simulation.
:param function dfun: A function that interfaces with the simulation.
It should take an ndarray of shape 1-by-m (e.g., a row of `X`), and it
should return the gradient of the quantity of interest as an ndarray of shape 1-by-m.
:param int avdim: The dimension of the active subspace. If `avdim` is not
present, it is chosen after computing the active subspaces using
the given interfaces.
**Notes**
This method follows these steps:
#. Draw random points according to the weight function on the space\
of simulation inputs.
#. Compute the quantity of interest and its gradient at the sampled\
inputs. If `dfun` is None, use finite differences.
#. Use the collection of gradients to estimate the eigenvectors and\
eigenvalues that determine and define the active subspace.
#. Train a response surface using the interface, which uses a careful\
design of experiments on the space of active variables. This design\
uses about 5 points per dimension of the active subspace.
"""
if not hasattr(fun, '__call__'):
raise TypeError('fun should be a callable function.')
if dfun is not None:
if not hasattr(dfun, '__call__'):
raise TypeError('dfun should be a callable function.')
if avdim is not None:
if not isinstance(avdim, int):
raise TypeError('avdim should be an integer')
m = self.m
# number of gradient samples
M = int(np.floor(6*(m+1)*np.log(m)))
# sample points for gradients
if self.bounded_inputs:
X = np.random.uniform(-1.0, 1.0, size=(M, m))
else:
X = np.random.normal(size=(M, m))
fun = SimulationRunner(fun)
f = fun.run(X)
self.X, self.f, self.fun = X, f, fun
# sample the simulation's gradients
if dfun == None:
df = finite_difference_gradients(X, fun)
else:
dfun = SimulationGradientRunner(dfun)
df = dfun.run(X)
self.dfun = dfun
# compute the active subspace
ss = Subspaces()
ss.compute(df)
if avdim is not None:
ss.partition(avdim)
self.n = ss.W1.shape[1]
print 'The dimension of the active subspace is {:d}.'.format(self.n)
# set up the active variable domain and map
if self.bounded_inputs:
avdom = BoundedActiveVariableDomain(ss)
avmap = BoundedActiveVariableMap(avdom)
else:
avdom = UnboundedActiveVariableDomain(ss)
avmap = UnboundedActiveVariableMap(avdom)
# build the response surface
asrs = ActiveSubspaceResponseSurface(avmap)
asrs.train_with_interface(fun, int(np.power(5,self.n)))
# compute testing error as an R-squared
self.Rsqr = 1.0 - ( np.linalg.norm(asrs.predict(X)[0] - f)**2 \
/ np.var(f) )
self.as_respsurf = asrs
def build_subspaces(df):
ss = Subspaces()
ss.compute_spectral_decomposition(df)
ss.compute_bootstrap_ranges()
ss.partition()
return ss
